This will take genotype log-likelihoods and normalize them to sum to one. This corresponds to using a naive discrete uniform prior over the genotypes. It is not generally recommended that you use this function.
gl_to_gp(gl)A three dimensional array of genotype log-likelihoods.
Element gl[i, j, k] is the genotype log-likelihood of dosage
k for individual j at SNP i.
A three-dimensional array, of the same dimensions as gl,
containing the posterior probabilities of each dosage.
data("glike")
class(glike)
#> [1] "array"
dim(glike)
#> [1] 10 84 5
gl_to_gp(glike)
#> , , variable = logL_0
#>
#> ind
#> snp P1PEM01 P1PEM02 P1PEM03 P1PEM04
#> PotVar0029907 3.537723e-44 2.310035e-38 7.271664e-40 4.960956e-44
#> PotVar0029908 3.537723e-44 2.310035e-38 7.271664e-40 4.960956e-44
#> PotVar0029910 4.730057e-42 3.336667e-63 4.404208e-68 1.643039e-39
#> PotVar0029911 7.110588e-22 1.565671e-53 4.693640e-26 5.271561e-43
#> PotVar0029912 5.970949e-62 3.335706e-73 1.649546e-88 1.364275e-44
#> PotVar0029913 5.970949e-62 3.335706e-73 1.649546e-88 1.364275e-44
#> PotVar0029916 9.679532e-40 9.550812e-73 2.857395e-85 1.587088e-44
#> PotVar0029917 9.679532e-40 9.550812e-73 2.857395e-85 1.587088e-44
#> PotVar0029921 8.062326e-50 1.149399e-51 3.804088e-87 1.715986e-93
#> PotVar0029925 5.298733e-35 1.473325e-33 2.903142e-31 1.598106e-16
#> ind
#> snp P1PEM05 P1PEM06 P1PEM07 P1PEM08
#> PotVar0029907 8.846756e-43 9.763994e-11 1.858220e-31 1.705996e-115
#> PotVar0029908 8.846756e-43 9.763994e-11 1.858220e-31 1.705996e-115
#> PotVar0029910 6.697668e-71 1.385383e-17 6.126222e-34 5.744847e-44
#> PotVar0029911 3.595842e-29 1.792257e-07 1.090086e-17 1.030216e-49
#> PotVar0029912 3.653517e-102 7.454722e-21 7.501491e-55 1.963398e-154
#> PotVar0029913 3.653517e-102 7.454722e-21 7.501491e-55 1.963398e-154
#> PotVar0029916 2.135237e-52 1.097989e-23 2.522301e-36 6.671089e-59
#> PotVar0029917 2.135237e-52 1.097989e-23 2.522301e-36 6.671089e-59
#> PotVar0029921 1.129257e-96 5.855964e-22 8.140385e-68 4.375757e-94
#> PotVar0029925 4.407455e-16 1.027995e-03 9.602294e-26 6.015589e-52
#> ind
#> snp P1PEM09 P1PEM10 P1PEM11 P1PEM12
#> PotVar0029907 7.705167e-33 1.617836e-59 4.194705e-71 2.258184e-63
#> PotVar0029908 7.705167e-33 1.617836e-59 4.194705e-71 2.258184e-63
#> PotVar0029910 2.523288e-96 4.837747e-69 3.536541e-101 1.991512e-76
#> PotVar0029911 1.806984e-54 1.743754e-53 8.421369e-81 1.329732e-84
#> PotVar0029912 2.806455e-104 1.432738e-136 8.232181e-114 2.258127e-92
#> PotVar0029913 2.806455e-104 1.432738e-136 8.232181e-114 2.258127e-92
#> PotVar0029916 3.465427e-98 1.442248e-139 1.802596e-59 2.274870e-89
#> PotVar0029917 3.465427e-98 1.442248e-139 1.802596e-59 2.274870e-89
#> PotVar0029921 3.932911e-62 3.804088e-87 2.523234e-59 6.333286e-48
#> PotVar0029925 4.588252e-38 1.391932e-52 8.370329e-28 2.644387e-38
#> ind
#> snp P2PEM01 P2PEM02 P2PEM03 P2PEM04
#> PotVar0029907 3.261520e-53 6.217357e-58 5.040405e-14 7.116247e-08
#> PotVar0029908 3.261520e-53 6.217357e-58 5.040405e-14 7.116247e-08
#> PotVar0029910 8.490315e-29 1.247317e-111 3.026118e-85 5.185988e-39
#> PotVar0029911 1.544144e-30 6.447334e-81 1.678755e-20 7.731009e-12
#> PotVar0029912 3.623039e-58 2.658204e-127 2.084703e-97 3.259717e-51
#> PotVar0029913 3.623039e-58 2.658204e-127 2.084703e-97 3.259717e-51
#> PotVar0029916 1.213976e-20 5.738940e-122 1.742955e-104 6.221618e-42
#> PotVar0029917 1.213976e-20 5.738940e-122 1.742955e-104 6.221618e-42
#> PotVar0029921 5.126040e-108 9.441547e-81 6.399934e-71 9.348170e-67
#> PotVar0029925 4.459066e-28 9.608939e-48 8.007477e-38 7.765756e-19
#> ind
#> snp P2PEM05 P2PEM06 P2PEM07 P2PEM08
#> PotVar0029907 1.724077e-31 4.109007e-46 9.646711e-07 1.803071e-29
#> PotVar0029908 1.724077e-31 4.109007e-46 9.646711e-07 1.803071e-29
#> PotVar0029910 4.262327e-103 5.237417e-61 3.445220e-40 3.374126e-63
#> PotVar0029911 1.543347e-43 1.837368e-42 8.454333e-12 3.472353e-50
#> PotVar0029912 5.104445e-116 2.412400e-58 6.956305e-41 2.562006e-62
#> PotVar0029913 5.104445e-116 2.412400e-58 6.956305e-41 2.562006e-62
#> PotVar0029916 5.738940e-122 5.546448e-54 1.574556e-38 1.175018e-54
#> PotVar0029917 5.738940e-122 5.546448e-54 1.574556e-38 1.175018e-54
#> PotVar0029921 1.295425e-94 5.339428e-56 4.644866e-27 1.345434e-79
#> PotVar0029925 6.683492e-48 3.710078e-25 2.429262e-20 2.636859e-26
#> ind
#> snp P2PEM09 P2PEM10 P2PEM11 P2PEM12
#> PotVar0029907 6.896602e-31 1.552171e-18 6.813226e-71 6.209886e-38
#> PotVar0029908 6.896602e-31 1.552171e-18 6.813226e-71 6.209886e-38
#> PotVar0029910 5.277912e-20 7.533270e-67 4.764377e-127 1.717765e-44
#> PotVar0029911 3.804202e-21 4.402444e-24 1.321729e-59 1.849304e-48
#> PotVar0029912 4.666027e-37 6.228738e-75 5.857529e-146 1.839073e-45
#> PotVar0029913 4.666027e-37 6.228738e-75 5.857529e-146 1.839073e-45
#> PotVar0029916 6.481527e-22 5.240525e-81 8.783431e-141 1.988247e-47
#> PotVar0029917 6.481527e-22 5.240525e-81 8.783431e-141 1.988247e-47
#> PotVar0029921 5.643829e-72 5.145783e-94 2.583286e-90 1.077863e-82
#> PotVar0029925 7.360346e-20 1.823193e-24 7.537092e-51 4.473519e-22
#> ind
#> snp P3PEM01 P3PEM02 P3PEM03 P3PEM04
#> PotVar0029907 4.079482e-63 1.000000e+00 1.000000e+00 4.801149e-81
#> PotVar0029908 4.079482e-63 1.000000e+00 1.000000e+00 4.801149e-81
#> PotVar0029910 1.413976e-61 1.000000e+00 1.015330e-56 2.311745e-83
#> PotVar0029911 5.947302e-46 1.000000e+00 1.000000e+00 8.416387e-103
#> PotVar0029912 1.169634e-128 1.000000e+00 1.524107e-63 4.073882e-94
#> PotVar0029913 1.169634e-128 1.000000e+00 1.524107e-63 4.073882e-94
#> PotVar0029916 2.786578e-82 1.000000e+00 9.719610e-57 1.393149e-109
#> PotVar0029917 2.786578e-82 1.000000e+00 9.719610e-57 1.393149e-109
#> PotVar0029921 4.303189e-72 1.396473e-70 9.860414e-94 1.319967e-88
#> PotVar0029925 3.407106e-52 3.471943e-01 1.511468e-24 2.961860e-33
#> ind
#> snp P3PEM05 P3PEM06 P3PEM07 P3PEM08
#> PotVar0029907 3.248391e-80 3.553225e-48 5.230056e-20 6.531307e-68
#> PotVar0029908 3.248391e-80 3.553225e-48 5.230056e-20 6.531307e-68
#> PotVar0029910 1.237932e-90 3.440060e-150 4.949273e-46 6.829171e-163
#> PotVar0029911 6.116762e-107 5.469758e-65 1.156001e-25 7.273933e-67
#> PotVar0029912 2.074680e-103 1.418083e-177 1.435814e-114 7.309936e-180
#> PotVar0029913 2.074680e-103 1.418083e-177 1.435814e-114 7.309936e-180
#> PotVar0029916 1.854634e-99 1.406159e-169 1.828706e-74 1.406776e-203
#> PotVar0029917 1.854634e-99 1.406159e-169 1.828706e-74 1.406776e-203
#> PotVar0029921 1.528238e-87 3.866399e-83 1.596756e-92 6.637585e-108
#> PotVar0029925 1.752938e-38 4.234955e-60 2.280913e-48 8.850416e-66
#> ind
#> snp P3PEM09 P3PEM10 P3PEM11 P3PEM12
#> PotVar0029907 1.988175e-29 1.158324e-103 1.000000e+00 1.787209e-48
#> PotVar0029908 1.988175e-29 1.158324e-103 1.000000e+00 1.787209e-48
#> PotVar0029910 2.523288e-96 2.391938e-193 1.671776e-53 5.489795e-25
#> PotVar0029911 9.810308e-44 1.491091e-79 1.000000e+00 4.515154e-27
#> PotVar0029912 1.552078e-108 5.729209e-212 5.374708e-61 8.967755e-57
#> PotVar0029913 1.552078e-108 5.729209e-212 5.374708e-61 8.967755e-57
#> PotVar0029916 2.357261e-116 1.071249e-221 4.923795e-61 7.626623e-33
#> PotVar0029917 2.357261e-116 1.071249e-221 4.923795e-61 7.626623e-33
#> PotVar0029921 3.168831e-62 3.183665e-104 2.536422e-92 1.971969e-90
#> PotVar0029925 4.602115e-45 1.525629e-43 1.368068e-25 1.928922e-18
#> ind
#> snp P4PEM01 P4PEM02 P4PEM03 P4PEM04
#> PotVar0029907 8.420030e-84 9.796036e-68 1.113902e-54 2.072185e-92
#> PotVar0029908 8.420030e-84 9.796036e-68 1.113902e-54 2.072185e-92
#> PotVar0029910 8.297408e-96 8.715108e-52 1.146382e-24 2.409014e-177
#> PotVar0029911 1.486553e-64 7.978735e-69 6.205283e-26 2.428713e-122
#> PotVar0029912 6.307226e-188 9.146810e-68 1.082305e-56 2.132685e-204
#> PotVar0029913 6.307226e-188 9.146810e-68 1.082305e-56 2.132685e-204
#> PotVar0029916 8.146748e-115 8.425580e-72 6.356843e-20 1.523750e-215
#> PotVar0029917 8.146748e-115 8.425580e-72 6.356843e-20 1.523750e-215
#> PotVar0029921 5.608004e-96 1.408338e-130 1.715597e-88 7.526177e-101
#> PotVar0029925 8.009567e-63 1.476345e-22 6.951971e-23 1.218463e-66
#> ind
#> snp P4PEM05 P4PEM06 P4PEM07 P4PEM08
#> PotVar0029907 4.116991e-50 1.831906e-21 3.951115e-46 1.122853e-24
#> PotVar0029908 4.116991e-50 1.831906e-21 3.951115e-46 1.122853e-24
#> PotVar0029910 2.039494e-95 1.188797e-23 5.186730e-49 1.635769e-68
#> PotVar0029911 6.079859e-63 1.392894e-27 7.155312e-56 5.705031e-30
#> PotVar0029912 1.303618e-104 3.176473e-29 4.823209e-52 3.735290e-75
#> PotVar0029913 1.303618e-104 3.176473e-29 4.823209e-52 3.735290e-75
#> PotVar0029916 7.714863e-109 4.574204e-33 1.742820e-58 5.577193e-73
#> PotVar0029917 7.714863e-109 4.574204e-33 1.742820e-58 5.577193e-73
#> PotVar0029921 1.993800e-90 6.172837e-101 1.609908e-89 6.416194e-116
#> PotVar0029925 8.959453e-36 2.436935e-14 1.503119e-21 2.061474e-22
#> ind
#> snp P4PEM09 P4PEM10 P4PEM11 P4PEM12
#> PotVar0029907 3.017658e-74 1.634709e-108 2.099251e-21 2.471591e-42
#> PotVar0029908 3.017658e-74 1.634709e-108 2.099251e-21 2.471591e-42
#> PotVar0029910 5.477525e-55 1.259081e-32 1.384809e-114 3.718024e-48
#> PotVar0029911 6.069662e-62 5.555095e-37 4.347381e-40 8.509680e-29
#> PotVar0029912 7.318086e-93 4.911037e-148 2.497717e-134 4.027810e-94
#> PotVar0029913 7.318086e-93 4.911037e-148 2.497717e-134 4.027810e-94
#> PotVar0029916 1.290167e-66 7.088401e-42 1.517827e-128 1.721968e-100
#> PotVar0029917 1.290167e-66 7.088401e-42 1.517827e-128 1.721968e-100
#> PotVar0029921 3.489422e-85 2.663141e-125 6.225748e-118 3.484693e-87
#> PotVar0029925 1.144341e-32 2.700594e-46 3.104237e-46 8.877181e-41
#> ind
#> snp P5PEM01 P5PEM02 P5PEM03 P5PEM04
#> PotVar0029907 1.382900e-44 1.502231e-99 1.147104e-73 2.210208e-29
#> PotVar0029908 1.382900e-44 1.502231e-99 1.147104e-73 2.210208e-29
#> PotVar0029910 3.832543e-120 3.469378e-94 1.620482e-80 1.871373e-33
#> PotVar0029911 3.078317e-49 2.158306e-108 6.150891e-93 4.748662e-46
#> PotVar0029912 2.091063e-141 2.756594e-115 4.857432e-88 7.373722e-45
#> PotVar0029913 2.091063e-141 2.756594e-115 4.857432e-88 7.373722e-45
#> PotVar0029916 1.753844e-118 2.357261e-116 2.103804e-78 9.321999e-24
#> PotVar0029917 1.753844e-118 2.357261e-116 2.103804e-78 9.321999e-24
#> PotVar0029921 6.683870e-69 1.545050e-59 1.012868e-49 5.568151e-51
#> PotVar0029925 6.240406e-52 1.346055e-43 5.365716e-41 1.199453e-18
#> ind
#> snp P5PEM05 P5PEM06 P5PEM07 P5PEM08
#> PotVar0029907 9.836552e-35 4.244215e-34 3.463037e-17 4.625894e-41
#> PotVar0029908 9.836552e-35 4.244215e-34 3.463037e-17 4.625894e-41
#> PotVar0029910 8.208878e-41 1.102774e-82 4.402137e-34 8.414841e-78
#> PotVar0029911 2.991301e-30 1.540518e-50 1.069087e-17 1.836813e-46
#> PotVar0029912 1.188338e-49 4.292351e-85 3.409466e-34 5.564202e-89
#> PotVar0029913 1.188338e-49 4.292351e-85 3.409466e-34 5.564202e-89
#> PotVar0029916 2.058040e-49 4.083990e-83 8.643452e-32 3.112000e-84
#> PotVar0029917 2.058040e-49 4.083990e-83 8.643452e-32 3.112000e-84
#> PotVar0029921 1.449024e-46 5.285033e-67 6.861735e-42 1.704797e-79
#> PotVar0029925 7.761506e-28 4.827137e-37 1.076747e-15 1.367017e-43
#> ind
#> snp P5PEM09 P5PEM10 P5PEM11 P5PEM12
#> PotVar0029907 3.294855e-20 2.251555e-66 1.765757e-17 1.437389e-75
#> PotVar0029908 3.294855e-20 2.251555e-66 1.765757e-17 1.437389e-75
#> PotVar0029910 5.920919e-72 3.904939e-76 4.293244e-17 2.286446e-79
#> PotVar0029911 1.000000e+00 9.736990e-86 2.079411e-17 6.736130e-94
#> PotVar0029912 1.731282e-79 5.792366e-91 1.379242e-19 2.396603e-96
#> PotVar0029913 1.731282e-79 5.792366e-91 1.379242e-19 2.396603e-96
#> PotVar0029916 4.024096e-45 2.359479e-82 1.960229e-19 3.182325e-73
#> PotVar0029917 4.024096e-45 2.359479e-82 1.960229e-19 3.182325e-73
#> PotVar0029921 2.250794e-75 1.791514e-72 4.799583e-59 5.662872e-64
#> PotVar0029925 8.868073e-29 7.923531e-38 3.415109e-12 1.257392e-35
#> ind
#> snp P6PEM01 P6PEM02 P6PEM03 P6PEM04
#> PotVar0029907 8.766439e-109 1.454322e-53 2.008690e-43 1.918317e-82
#> PotVar0029908 8.766439e-109 1.454322e-53 2.008690e-43 1.918317e-82
#> PotVar0029910 3.320565e-124 8.808680e-87 1.844822e-51 2.358920e-130
#> PotVar0029911 1.826322e-144 6.304089e-39 2.717084e-33 3.848175e-101
#> PotVar0029912 9.287811e-140 4.496918e-103 2.240385e-85 3.772067e-157
#> PotVar0029913 9.287811e-140 4.496918e-103 2.240385e-85 3.772067e-157
#> PotVar0029916 3.047442e-135 2.842468e-111 7.898834e-42 2.155208e-154
#> PotVar0029917 3.047442e-135 2.842468e-111 7.898834e-42 2.155208e-154
#> PotVar0029921 2.685922e-85 3.968023e-48 1.594114e-40 4.307340e-83
#> PotVar0029925 1.859443e-49 1.923695e-46 4.413266e-37 5.912543e-58
#> ind
#> snp P6PEM05 P6PEM06 P6PEM07 P6PEM08
#> PotVar0029907 1.724565e-138 4.493543e-09 1.507910e-16 3.394159e-52
#> PotVar0029908 1.724565e-138 4.493543e-09 1.507910e-16 3.394159e-52
#> PotVar0029910 4.911895e-158 4.343452e-13 2.279199e-110 1.250620e-35
#> PotVar0029911 7.495567e-117 1.200429e-15 1.040250e-23 2.366230e-38
#> PotVar0029912 7.381260e-175 1.425532e-14 1.279730e-126 8.796464e-59
#> PotVar0029913 7.381260e-175 1.425532e-14 1.279730e-126 8.796464e-59
#> PotVar0029916 1.409865e-166 9.810583e-17 1.225474e-115 1.085320e-29
#> PotVar0029917 1.409865e-166 9.810583e-17 1.225474e-115 1.085320e-29
#> PotVar0029921 2.280712e-91 2.258412e-48 3.238568e-67 3.192724e-55
#> PotVar0029925 3.816596e-55 2.808397e-11 3.800945e-50 5.128774e-31
#> ind
#> snp P6PEM09 P6PEM10 P6PEM11 P6PEM12
#> PotVar0029907 9.376231e-14 1.369155e-47 1.138749e-27 3.542398e-34
#> PotVar0029908 9.376231e-14 1.369155e-47 1.138749e-27 3.542398e-34
#> PotVar0029910 7.223268e-48 1.230264e-61 4.748547e-89 7.384078e-93
#> PotVar0029911 2.365415e-11 9.612217e-74 2.014468e-21 2.972111e-42
#> PotVar0029912 3.489663e-71 4.339938e-76 1.135369e-100 9.525849e-117
#> PotVar0029913 3.489663e-71 4.339938e-76 1.135369e-100 9.525849e-117
#> PotVar0029916 8.318923e-62 1.794296e-60 1.402229e-100 1.308067e-91
#> PotVar0029917 8.318923e-62 1.794296e-60 1.402229e-100 1.308067e-91
#> PotVar0029921 1.559000e-58 6.686648e-91 6.780452e-63 1.702905e-52
#> PotVar0029925 1.516002e-25 3.531562e-15 4.180536e-46 6.937825e-45
#> ind
#> snp P7PEM01 P7PEM02 P7PEM03 P7PEM04
#> PotVar0029907 4.196882e-30 1.664757e-19 3.490647e-28 9.999951e-01
#> PotVar0029908 4.196882e-30 1.664757e-19 3.490647e-28 9.999951e-01
#> PotVar0029910 4.362756e-42 2.908559e-62 1.340601e-45 3.320544e-15
#> PotVar0029911 1.838528e-32 4.764721e-32 2.097390e-31 9.999999e-01
#> PotVar0029912 9.706647e-51 5.136393e-63 6.869395e-62 1.925973e-13
#> PotVar0029913 9.706647e-51 5.136393e-63 6.869395e-62 1.925973e-13
#> PotVar0029916 3.680985e-58 1.040452e-50 1.308491e-46 8.273296e-14
#> PotVar0029917 3.680985e-58 1.040452e-50 1.308491e-46 8.273296e-14
#> PotVar0029921 1.202540e-41 3.445622e-39 2.014308e-65 3.284122e-36
#> PotVar0029925 9.175464e-27 9.423566e-31 2.919088e-25 1.326965e-07
#> ind
#> snp P7PEM05 P7PEM06 P7PEM07 P7PEM08
#> PotVar0029907 3.969769e-28 3.573377e-18 1.634621e-21 4.758251e-30
#> PotVar0029908 3.969769e-28 3.573377e-18 1.634621e-21 4.758251e-30
#> PotVar0029910 7.341244e-43 3.243147e-41 1.135740e-43 9.342724e-48
#> PotVar0029911 4.963107e-50 9.898229e-30 4.886944e-14 3.490371e-22
#> PotVar0029912 2.159834e-46 4.070659e-50 2.360727e-55 4.127627e-74
#> PotVar0029913 2.159834e-46 4.070659e-50 2.360727e-55 4.127627e-74
#> PotVar0029916 1.610994e-32 7.098218e-44 1.409778e-59 1.316628e-42
#> PotVar0029917 1.610994e-32 7.098218e-44 1.409778e-59 1.316628e-42
#> PotVar0029921 9.818314e-56 6.715089e-59 2.114544e-25 6.644321e-61
#> PotVar0029925 1.572108e-17 7.915104e-29 2.757278e-18 1.025441e-38
#> ind
#> snp P7PEM09 P7PEM10 P7PEM11 P7PEM12
#> PotVar0029907 7.939496e-25 9.773094e-48 3.005266e-17 8.057550e-49
#> PotVar0029908 7.939496e-25 9.773094e-48 3.005266e-17 8.057550e-49
#> PotVar0029910 2.592005e-32 3.292122e-53 5.600210e-80 2.183545e-45
#> PotVar0029911 2.452519e-12 5.838955e-61 1.076207e-27 9.726863e-29
#> PotVar0029912 3.668136e-34 5.971460e-55 6.004269e-88 3.450256e-67
#> PotVar0029913 3.668136e-34 5.971460e-55 6.004269e-88 3.450256e-67
#> PotVar0029916 8.495340e-24 4.260454e-50 6.584889e-81 1.269107e-40
#> PotVar0029917 8.495340e-24 4.260454e-50 6.584889e-81 1.269107e-40
#> PotVar0029921 4.344451e-44 7.022742e-73 7.022742e-73 4.652165e-29
#> PotVar0029925 3.287927e-17 1.162664e-20 1.388587e-36 5.595214e-35
#>
#> , , variable = logL_1
#>
#> ind
#> snp P1PEM01 P1PEM02 P1PEM03 P1PEM04
#> PotVar0029907 4.088512e-16 2.065970e-10 2.030089e-05 1.262278e-07
#> PotVar0029908 4.088512e-16 2.065970e-10 2.030089e-05 1.262278e-07
#> PotVar0029910 6.503640e-10 3.447470e-24 8.729661e-18 4.828026e-04
#> PotVar0029911 1.093686e-01 2.844599e-14 9.999935e-01 1.600748e-03
#> PotVar0029912 2.232460e-22 1.690644e-27 4.624586e-26 4.869662e-04
#> PotVar0029913 2.232460e-22 1.690644e-27 4.624586e-26 4.869662e-04
#> PotVar0029916 7.544583e-09 3.135202e-28 4.337923e-26 1.748159e-04
#> PotVar0029917 7.544583e-09 3.135202e-28 4.337923e-26 1.748159e-04
#> PotVar0029921 3.167933e-08 1.947233e-07 3.312443e-16 1.009232e-15
#> PotVar0029925 1.914671e-13 1.027878e-13 3.687441e-09 9.367430e-02
#> ind
#> snp P1PEM05 P1PEM06 P1PEM07 P1PEM08 P1PEM09
#> PotVar0029907 6.752303e-06 0.186242217 1.925706e-03 7.707553e-53 1.805143e-05
#> PotVar0029908 6.752303e-06 0.186242217 1.925706e-03 7.707553e-53 1.805143e-05
#> PotVar0029910 9.219166e-20 0.027120976 3.288375e-04 2.000108e-04 4.596977e-41
#> PotVar0029911 9.990205e-01 0.991863072 9.999448e-01 5.351080e-04 3.175440e-09
#> PotVar0029912 1.624638e-32 0.022836478 2.448124e-11 3.064967e-69 1.244647e-41
#> PotVar0029913 1.624638e-32 0.022836478 2.448124e-11 3.064967e-69 1.244647e-41
#> PotVar0029916 9.253942e-07 0.002021572 1.695400e-03 1.066984e-08 6.588365e-41
#> PotVar0029917 9.253942e-07 0.002021572 1.695400e-03 1.066984e-08 6.588365e-41
#> PotVar0029921 1.145547e-17 0.001059245 2.406260e-12 6.659125e-16 7.335162e-11
#> PotVar0029925 2.112908e-01 0.995216544 1.778013e-06 1.160853e-22 4.743195e-16
#> ind
#> snp P1PEM10 P1PEM11 P1PEM12 P2PEM01
#> PotVar0029907 4.029355e-15 1.080438e-27 5.206760e-25 8.547532e-10
#> PotVar0029908 4.029355e-15 1.080438e-27 5.206760e-25 8.547532e-10
#> PotVar0029910 1.308533e-17 1.074710e-43 1.114014e-30 9.995623e-01
#> PotVar0029911 2.526436e-07 4.515500e-23 1.265174e-32 9.999750e-01
#> PotVar0029912 3.760773e-60 8.699766e-48 9.348374e-37 2.526631e-08
#> PotVar0029913 3.760773e-60 8.699766e-48 9.348374e-37 2.526631e-08
#> PotVar0029916 1.487593e-62 2.343781e-15 2.463823e-34 9.999999e-01
#> PotVar0029917 1.487593e-62 2.343781e-15 2.463823e-34 9.999999e-01
#> PotVar0029921 3.312443e-16 1.447546e-08 8.897342e-08 3.472959e-21
#> PotVar0029925 6.111131e-24 1.050248e-07 3.549656e-16 4.647065e-07
#> ind
#> snp P2PEM02 P2PEM03 P2PEM04 P2PEM05
#> PotVar0029907 6.830904e-14 9.972721e-01 9.997192e-01 2.223635e-02
#> PotVar0029908 6.830904e-14 9.972721e-01 9.997192e-01 2.223635e-02
#> PotVar0029910 1.773337e-49 3.380562e-35 2.786360e-08 1.208194e-43
#> PotVar0029911 3.731562e-22 9.951212e-01 9.998959e-01 6.804790e-05
#> PotVar0029912 4.831539e-55 2.753080e-39 5.225113e-13 5.858335e-49
#> PotVar0029913 4.831539e-55 2.753080e-39 5.225113e-13 5.858335e-49
#> PotVar0029916 1.260669e-53 3.344999e-44 1.588260e-08 1.260669e-53
#> PotVar0029917 1.260669e-53 3.344999e-44 1.588260e-08 1.260669e-53
#> PotVar0029921 1.319806e-12 2.960611e-11 2.856667e-11 1.035288e-16
#> PotVar0029925 2.920757e-21 6.354896e-16 1.566206e-04 2.392552e-21
#> ind
#> snp P2PEM06 P2PEM07 P2PEM08 P2PEM09
#> PotVar0029907 5.260205e-13 9.343246e-01 2.936087e-03 1.391237e-03
#> PotVar0029908 5.260205e-13 9.343246e-01 2.936087e-03 1.391237e-03
#> PotVar0029910 5.116099e-18 7.134061e-14 5.353433e-18 9.995215e-01
#> PotVar0029911 1.922675e-06 7.807870e-01 1.743046e-08 9.998748e-01
#> PotVar0029912 1.117804e-14 1.532491e-13 7.078013e-16 9.820447e-04
#> PotVar0029913 1.117804e-14 1.532491e-13 7.078013e-16 9.820447e-04
#> PotVar0029916 1.334782e-14 3.607485e-13 6.338190e-12 9.990658e-01
#> PotVar0029917 1.334782e-14 3.607485e-13 6.338190e-12 9.990658e-01
#> PotVar0029921 9.790517e-08 1.159283e-04 2.345374e-16 2.726362e-12
#> PotVar0029925 3.144589e-07 2.208432e-07 3.169945e-07 5.301171e-04
#> ind
#> snp P2PEM10 P2PEM11 P2PEM12 P3PEM01
#> PotVar0029907 9.999874e-01 2.291100e-19 1.917596e-05 6.795517e-19
#> PotVar0029908 9.999874e-01 2.291100e-19 1.917596e-05 6.795517e-19
#> PotVar0029910 4.106948e-16 2.984296e-57 3.654835e-07 9.131220e-15
#> PotVar0029911 9.999929e-01 2.701902e-08 4.932582e-07 5.550505e-05
#> PotVar0029912 6.455970e-18 2.020708e-65 4.660202e-06 8.758459e-56
#> PotVar0029913 6.455970e-18 2.020708e-65 4.660202e-06 8.758459e-56
#> PotVar0029916 1.977048e-21 2.993822e-63 1.826526e-05 3.075846e-25
#> PotVar0029917 1.977048e-21 2.993822e-63 1.826526e-05 3.075846e-25
#> PotVar0029921 1.572955e-16 6.180410e-13 2.756891e-15 1.173650e-07
#> PotVar0029925 3.101158e-05 5.632094e-23 2.533779e-04 1.006588e-23
#> ind
#> snp P3PEM02 P3PEM03 P3PEM04 P3PEM05
#> PotVar0029907 1.220048e-09 7.193158e-15 8.619382e-25 1.156069e-23
#> PotVar0029908 1.220048e-09 7.193158e-15 8.619382e-25 1.156069e-23
#> PotVar0029910 1.379154e-14 6.997552e-08 5.754339e-22 1.240005e-28
#> PotVar0029911 2.323220e-15 2.353994e-17 1.663890e-27 5.451807e-33
#> PotVar0029912 1.216298e-15 3.023207e-08 1.171356e-23 5.495304e-32
#> PotVar0029913 1.216298e-15 3.023207e-08 1.171356e-23 5.495304e-32
#> PotVar0029916 8.235080e-13 3.029770e-07 2.503168e-36 1.116589e-29
#> PotVar0029917 8.235080e-13 3.029770e-07 2.503168e-36 1.116589e-29
#> PotVar0029921 9.042202e-08 1.528967e-10 8.424168e-08 5.776296e-09
#> PotVar0029925 6.528057e-01 8.760232e-05 3.347109e-09 2.470209e-12
#> ind
#> snp P3PEM06 P3PEM07 P3PEM08 P3PEM09
#> PotVar0029907 3.544270e-06 1.000000e+00 1.108882e-13 1.740095e-03
#> PotVar0029908 3.544270e-06 1.000000e+00 1.108882e-13 1.740095e-03
#> PotVar0029910 5.778129e-72 7.324468e-04 1.058504e-79 4.596977e-41
#> PotVar0029911 4.424244e-09 1.000000e+00 1.480540e-08 6.320254e-06
#> PotVar0029912 8.711941e-84 1.774678e-36 3.412735e-84 5.172949e-45
#> PotVar0029913 8.711941e-84 1.774678e-36 3.412735e-84 5.172949e-45
#> PotVar0029916 5.138916e-81 4.002317e-13 5.589357e-101 1.476105e-50
#> PotVar0029917 5.138916e-81 4.002317e-13 5.589357e-101 1.476105e-50
#> PotVar0029921 6.928134e-06 3.310929e-07 2.939665e-10 2.639143e-05
#> PotVar0029925 3.576815e-28 1.768729e-18 2.048422e-31 8.521149e-20
#> ind
#> snp P3PEM10 P3PEM11 P3PEM12 P4PEM01
#> PotVar0029907 7.066338e-34 8.969652e-11 5.701836e-07 1.194537e-23
#> PotVar0029908 7.066338e-34 8.969652e-11 5.701836e-07 1.194537e-23
#> PotVar0029910 8.922295e-99 2.554218e-08 9.999978e-01 1.620427e-28
#> PotVar0029911 1.003836e-11 1.891245e-20 1.000000e+00 4.348460e-08
#> PotVar0029912 5.190751e-103 5.792471e-08 3.946833e-07 5.542937e-90
#> PotVar0029913 5.190751e-103 5.792471e-08 3.946833e-07 5.542937e-90
#> PotVar0029916 2.160861e-112 1.190733e-09 9.997155e-01 1.294155e-37
#> PotVar0029917 2.160861e-112 1.190733e-09 9.997155e-01 1.294155e-37
#> PotVar0029921 6.336281e-08 4.303144e-10 3.387305e-09 8.374716e-09
#> PotVar0029925 1.821180e-14 6.007265e-05 2.764332e-02 1.007163e-29
#> ind
#> snp P4PEM02 P4PEM03 P4PEM04 P4PEM05
#> PotVar0029907 6.501135e-12 3.080792e-10 5.763822e-29 1.217838e-07
#> PotVar0029908 6.501135e-12 3.080792e-10 5.763822e-29 1.217838e-07
#> PotVar0029910 1.542317e-04 9.999939e-01 1.143684e-88 1.709539e-29
#> PotVar0029911 5.927869e-08 9.999997e-01 2.839362e-36 6.186537e-08
#> PotVar0029912 6.443552e-08 8.825675e-08 5.280119e-100 2.316004e-30
#> PotVar0029913 6.443552e-08 8.825675e-08 5.280119e-100 2.316004e-30
#> PotVar0029916 2.687444e-09 1.000000e+00 2.830189e-109 2.777572e-34
#> PotVar0029917 2.687444e-09 1.000000e+00 2.830189e-109 2.777572e-34
#> PotVar0029921 1.759202e-18 1.553021e-09 4.100949e-08 2.427083e-08
#> PotVar0029925 1.801178e-03 3.957717e-04 6.564573e-32 1.358202e-10
#> ind
#> snp P4PEM06 P4PEM07 P4PEM08 P4PEM09
#> PotVar0029907 9.999999e-01 3.556766e-06 1.000000e+00 1.347005e-21
#> PotVar0029908 9.999999e-01 3.556766e-06 1.000000e+00 1.347005e-21
#> PotVar0029910 9.999999e-01 1.281941e-06 1.272303e-12 4.172728e-08
#> PotVar0029911 9.999999e-01 5.685097e-07 1.000000e+00 2.631905e-08
#> PotVar0029912 9.999993e-01 1.812721e-05 6.870439e-13 4.966759e-25
#> PotVar0029913 9.999993e-01 1.812721e-05 6.870439e-13 4.966759e-25
#> PotVar0029916 9.999997e-01 3.198233e-08 1.197715e-11 6.949490e-11
#> PotVar0029917 9.999997e-01 3.198233e-08 1.197715e-11 6.949490e-11
#> PotVar0029921 2.775603e-12 5.085823e-08 7.635892e-13 1.673186e-05
#> PotVar0029925 7.203506e-01 2.486407e-03 1.972046e-03 1.336963e-08
#> ind
#> snp P4PEM10 P4PEM11 P4PEM12 P5PEM01
#> PotVar0029907 9.024651e-36 1.000000e+00 5.019232e-05 2.981489e-07
#> PotVar0029908 9.024651e-36 1.000000e+00 5.019232e-05 2.981489e-07
#> PotVar0029910 1.000000e+00 4.135487e-36 1.112452e-05 2.700891e-54
#> PotVar0029911 1.000000e+00 1.000000e+00 9.999998e-01 4.165435e-05
#> PotVar0029912 8.433374e-51 1.488022e-41 2.412348e-25 8.345333e-62
#> PotVar0029913 8.433374e-51 1.488022e-41 2.412348e-25 8.345333e-62
#> PotVar0029916 9.999965e-01 1.090690e-39 1.289652e-30 1.023831e-51
#> PotVar0029917 9.999965e-01 1.090690e-39 1.289652e-30 1.023831e-51
#> PotVar0029921 1.203689e-14 6.319170e-12 8.918053e-08 7.231106e-05
#> PotVar0029925 1.127287e-15 9.316647e-16 5.312839e-14 1.410054e-23
#> ind
#> snp P5PEM02 P5PEM03 P5PEM04 P5PEM05
#> PotVar0029907 7.307220e-44 3.968848e-30 1.021553e-03 2.544830e-05
#> PotVar0029908 7.307220e-44 3.968848e-30 1.021553e-03 2.544830e-05
#> PotVar0029910 6.460064e-40 9.318701e-33 4.426620e-05 5.991997e-08
#> PotVar0029911 2.032718e-44 1.163660e-36 8.621198e-08 1.388933e-02
#> PotVar0029912 1.436234e-48 1.309472e-34 8.635230e-08 2.514298e-10
#> PotVar0029913 1.436234e-48 1.309472e-34 8.635230e-08 2.514298e-10
#> PotVar0029916 1.476105e-50 5.911190e-31 3.777840e-01 2.225674e-10
#> PotVar0029917 1.476105e-50 5.911190e-31 3.777840e-01 2.225674e-10
#> PotVar0029921 1.192684e-03 3.293790e-04 3.968493e-04 3.836076e-03
#> PotVar0029925 5.312337e-19 1.325659e-17 4.059027e-03 6.223701e-08
#> ind
#> snp P5PEM06 P5PEM07 P5PEM08 P5PEM09
#> PotVar0029907 4.524270e-04 3.731883e-01 1.310803e-04 8.573917e-01
#> PotVar0029908 4.524270e-04 3.731883e-01 1.310803e-04 8.573917e-01
#> PotVar0029910 1.528768e-26 1.890638e-05 5.607083e-22 2.381711e-22
#> PotVar0029911 3.292974e-06 9.683290e-01 1.777840e-04 3.398471e-12
#> PotVar0029912 1.147722e-24 2.094798e-05 3.025284e-25 2.881032e-23
#> PotVar0029913 1.147722e-24 2.094798e-05 3.025284e-25 2.881032e-23
#> PotVar0029916 3.216025e-24 3.676297e-04 4.390226e-25 1.273036e-06
#> PotVar0029917 3.216025e-24 3.676297e-04 4.390226e-25 1.273036e-06
#> PotVar0029921 5.748170e-04 1.288807e-02 9.311403e-06 8.095672e-08
#> PotVar0029925 1.465878e-12 1.296152e-02 2.776471e-16 3.665837e-08
#> ind
#> snp P5PEM10 P5PEM11 P5PEM12 P6PEM01
#> PotVar0029907 2.597318e-19 9.574524e-01 3.708924e-24 5.100803e-49
#> PotVar0029908 2.597318e-19 9.574524e-01 3.708924e-24 5.100803e-49
#> PotVar0029910 3.074260e-23 9.989791e-01 1.702194e-23 1.261505e-56
#> PotVar0029911 1.101220e-24 9.998139e-01 1.130273e-27 1.047279e-63
#> PotVar0029912 1.478170e-27 9.993785e-01 6.731056e-29 6.252538e-62
#> PotVar0029913 1.478170e-27 9.993785e-01 6.731056e-29 6.252538e-62
#> PotVar0029916 4.925963e-24 9.879750e-01 1.894349e-18 4.342847e-60
#> PotVar0029917 4.925963e-24 9.879750e-01 1.894349e-18 4.342847e-60
#> PotVar0029921 2.842507e-06 4.295071e-05 7.791838e-03 3.523314e-10
#> PotVar0029925 7.828750e-13 5.702401e-01 4.007416e-11 2.859784e-21
#> ind
#> snp P6PEM02 P6PEM03 P6PEM04 P6PEM05
#> PotVar0029907 4.407467e-14 2.960604e-11 2.231078e-26 2.392107e-66
#> PotVar0029908 4.407467e-14 2.960604e-11 2.231078e-26 2.392107e-66
#> PotVar0029910 5.343838e-36 6.026448e-14 3.440149e-60 9.995721e-77
#> PotVar0029911 2.017123e-04 5.216676e-04 2.120402e-29 6.969231e-36
#> PotVar0029912 3.517858e-42 2.640622e-33 8.097498e-72 3.297539e-81
#> PotVar0029913 3.517858e-42 2.640622e-33 8.097498e-72 3.297539e-81
#> PotVar0029916 8.177559e-48 4.502800e-08 4.861073e-72 2.331890e-78
#> PotVar0029917 8.177559e-48 4.502800e-08 4.861073e-72 2.331890e-78
#> PotVar0029921 4.364808e-02 3.239073e-02 8.154698e-08 1.572205e-09
#> PotVar0029925 1.509075e-20 1.553651e-15 5.872125e-27 5.978989e-24
#> ind
#> snp P6PEM06 P6PEM07 P6PEM08 P6PEM09
#> PotVar0029907 9.992345e-01 9.999180e-01 1.771236e-14 9.998415e-01
#> PotVar0029908 9.992345e-01 9.999180e-01 1.771236e-14 9.998415e-01
#> PotVar0029910 9.994664e-01 9.012539e-49 6.086831e-04 1.416459e-10
#> PotVar0029911 9.934970e-01 9.999890e-01 7.675786e-04 9.999998e-01
#> PotVar0029912 9.970398e-01 1.138769e-54 1.503690e-12 7.882273e-19
#> PotVar0029913 9.970398e-01 1.138769e-54 1.503690e-12 7.882273e-19
#> PotVar0029916 9.929364e-01 3.611095e-50 3.013564e-03 3.573376e-17
#> PotVar0029917 9.929364e-01 3.611095e-50 3.013564e-03 3.573376e-17
#> PotVar0029921 1.145273e-05 8.575011e-06 4.875513e-04 4.514322e-07
#> PotVar0029925 5.460425e-01 1.381042e-22 6.364509e-10 9.090241e-07
#> ind
#> snp P6PEM10 P6PEM11 P6PEM12 P7PEM01
#> PotVar0029907 2.421418e-06 5.344791e-03 5.322512e-05 4.128464e-07
#> PotVar0029908 2.421418e-06 5.344791e-03 5.322512e-05 4.128464e-07
#> PotVar0029910 2.402551e-10 3.446364e-37 4.599480e-38 3.000627e-13
#> PotVar0029911 4.621334e-12 9.982341e-01 7.564720e-05 2.644021e-07
#> PotVar0029912 3.183305e-13 6.008054e-41 2.395748e-49 1.528130e-17
#> PotVar0029913 3.183305e-13 6.008054e-41 2.395748e-49 1.528130e-17
#> PotVar0029916 9.082372e-08 3.748382e-42 1.572588e-37 2.929746e-20
#> PotVar0029917 9.082372e-08 3.748382e-42 1.572588e-37 2.929746e-20
#> PotVar0029921 2.030788e-09 8.682213e-07 2.040914e-04 7.318160e-05
#> PotVar0029925 5.744854e-01 2.306114e-20 1.065114e-19 2.415593e-10
#> ind
#> snp P7PEM02 P7PEM03 P7PEM04 P7PEM05
#> PotVar0029907 1.080841e-01 2.784081e-02 4.869533e-06 1.712759e-02
#> PotVar0029908 1.080841e-01 2.784081e-02 4.869533e-06 1.712759e-02
#> PotVar0029910 9.657091e-24 1.317954e-08 9.947485e-01 4.193198e-07
#> PotVar0029911 1.380430e-04 2.453699e-02 6.788902e-08 3.744484e-08
#> PotVar0029912 7.497708e-23 1.178048e-14 9.999012e-01 3.247900e-07
#> PotVar0029913 7.497708e-23 1.178048e-14 9.999012e-01 3.247900e-07
#> PotVar0029916 3.204197e-18 6.569957e-09 9.994469e-01 9.756818e-03
#> PotVar0029917 3.204197e-18 6.569957e-09 9.994469e-01 9.756818e-03
#> PotVar0029921 1.606321e-03 1.097224e-07 1.316350e-03 2.752042e-04
#> PotVar0029925 2.683872e-12 1.555860e-06 9.979084e-01 9.798932e-03
#> ind
#> snp P7PEM06 P7PEM07 P7PEM08 P7PEM09
#> PotVar0029907 1.165726e-01 1.195803e-03 2.413067e-03 0.0174766532
#> PotVar0029908 1.165726e-01 1.195803e-03 2.413067e-03 0.0174766532
#> PotVar0029910 6.433626e-09 2.425306e-15 4.625856e-08 0.0001135395
#> PotVar0029911 6.372235e-03 6.023094e-01 9.999847e-01 0.9995258092
#> PotVar0029912 2.085128e-11 1.692373e-19 2.397780e-19 0.0001883003
#> PotVar0029913 2.085128e-11 1.692373e-19 2.397780e-19 0.0001883003
#> PotVar0029916 2.912797e-09 3.993749e-22 1.249765e-04 0.1940625875
#> PotVar0029917 2.912797e-09 3.993749e-22 1.249765e-04 0.1940625875
#> PotVar0029921 1.715862e-06 4.368581e-02 8.832645e-03 0.0035803666
#> PotVar0029925 4.732996e-09 1.794175e-04 1.230292e-13 0.0085694867
#> ind
#> snp P7PEM10 P7PEM11 P7PEM12
#> PotVar0029907 6.429664e-09 9.999946e-01 8.858371e-15
#> PotVar0029908 6.429664e-09 9.999946e-01 8.858371e-15
#> PotVar0029910 7.627293e-09 1.730039e-23 3.742789e-12
#> PotVar0029911 1.591480e-09 9.999872e-01 2.311421e-03
#> PotVar0029912 1.528158e-07 2.921457e-24 9.918228e-25
#> PotVar0029913 1.528158e-07 2.921457e-24 9.918228e-25
#> PotVar0029916 3.402855e-06 1.554228e-23 2.095433e-10
#> PotVar0029917 3.402855e-06 1.554228e-23 2.095433e-10
#> PotVar0029921 1.285635e-06 1.285635e-06 3.978655e-01
#> PotVar0029925 2.247438e-03 6.339942e-12 1.919396e-14
#>
#> , , variable = logL_2
#>
#> ind
#> snp P1PEM01 P1PEM02 P1PEM03 P1PEM04 P1PEM05
#> PotVar0029907 1.500025e-08 1.158799e-03 9.999661e-01 0.981060251 9.999894e-01
#> PotVar0029908 1.500025e-08 1.158799e-03 9.999661e-01 0.981060251 9.999894e-01
#> PotVar0029910 9.832268e-03 1.326711e-12 3.931051e-04 0.999517140 2.908446e-05
#> PotVar0029911 8.905240e-01 8.333786e-05 6.523755e-06 0.998399251 9.795230e-04
#> PotVar0029912 1.338585e-11 3.029975e-14 9.053108e-08 0.999513032 2.281194e-10
#> PotVar0029913 1.338585e-11 3.029975e-14 9.053108e-08 0.999513032 2.281194e-10
#> PotVar0029916 2.467250e-02 1.029134e-14 4.487210e-08 0.999825181 9.999990e-01
#> PotVar0029917 2.467250e-02 1.029134e-14 4.487210e-08 0.999825181 9.999990e-01
#> PotVar0029921 1.916616e-02 9.457133e-02 2.667025e-04 0.003145708 2.989945e-04
#> PotVar0029925 6.162654e-06 5.761675e-07 1.191337e-02 0.904638460 7.882304e-01
#> ind
#> snp P1PEM06 P1PEM07 P1PEM08 P1PEM09 P1PEM10
#> PotVar0029907 0.762206023 9.980662e-01 2.337701e-28 8.880198e-01 1.884472e-03
#> PotVar0029908 0.762206023 9.980662e-01 2.337701e-28 8.880198e-01 1.884472e-03
#> PotVar0029910 0.919784566 9.995382e-01 9.998000e-01 1.433585e-21 9.752841e-04
#> PotVar0029911 0.008136693 5.516362e-05 9.994649e-01 9.396485e-01 9.999951e-01
#> PotVar0029912 0.965989409 5.413222e-02 1.025972e-35 1.162503e-20 1.131985e-31
#> PotVar0029913 0.965989409 5.413222e-02 1.025972e-35 1.162503e-20 1.131985e-31
#> PotVar0029916 0.923524356 9.983043e-01 9.999998e-01 2.001330e-21 2.407426e-32
#> PotVar0029917 0.923524356 9.983043e-01 9.999998e-01 2.001330e-21 2.407426e-32
#> PotVar0029921 0.149355133 1.284153e-03 2.739504e-03 3.897833e-03 2.667025e-04
#> PotVar0029925 0.003754694 1.331633e-01 9.239698e-11 3.665945e-08 2.679623e-12
#> ind
#> snp P1PEM11 P1PEM12 P2PEM01 P2PEM02
#> PotVar0029907 1.110264e-13 3.265558e-13 9.892772e-01 1.056550e-02
#> PotVar0029908 1.110264e-13 3.265558e-13 9.892772e-01 1.056550e-02
#> PotVar0029910 5.382862e-23 5.148236e-16 4.377284e-04 3.755584e-26
#> PotVar0029911 4.764768e-07 6.217329e-17 2.495600e-05 3.378176e-06
#> PotVar0029912 5.741464e-25 4.315258e-19 9.999987e-01 6.900601e-29
#> PotVar0029913 5.741464e-25 4.315258e-19 9.999987e-01 6.900601e-29
#> PotVar0029916 3.306021e-04 3.354894e-16 6.551917e-08 2.660686e-28
#> PotVar0029917 3.306021e-04 3.354894e-16 6.551917e-08 2.660686e-28
#> PotVar0029921 8.065627e-02 2.659239e-02 1.992008e-05 1.893624e-02
#> PotVar0029925 3.611965e-02 3.156961e-08 1.280883e-01 7.017084e-11
#> ind
#> snp P2PEM03 P2PEM04 P2PEM05 P2PEM06
#> PotVar0029907 2.727927e-03 0.0002806843 9.777636e-01 1.898999e-04
#> PotVar0029908 2.727927e-03 0.0002806843 9.777636e-01 1.898999e-04
#> PotVar0029910 2.036966e-18 0.0651172129 5.796385e-22 5.565095e-06
#> PotVar0029911 4.878763e-03 0.0001040910 9.999308e-01 9.793466e-01
#> PotVar0029912 1.978095e-20 0.0004358697 1.345264e-25 3.482611e-04
#> PotVar0029913 1.978095e-20 0.0004358697 1.345264e-25 3.482611e-04
#> PotVar0029916 3.414614e-23 0.1064024500 2.660686e-28 1.215989e-04
#> PotVar0029917 3.414614e-23 0.1064024500 2.660686e-28 1.215989e-04
#> PotVar0029921 1.548876e-02 0.0057355371 8.339380e-04 1.430770e-01
#> PotVar0029925 4.262399e-08 0.2321861906 6.316753e-11 2.613028e-02
#> ind
#> snp P2PEM07 P2PEM08 P2PEM09 P2PEM10
#> PotVar0029907 6.565180e-02 9.970332e-01 0.9985731540 1.255553e-05
#> PotVar0029908 6.565180e-02 9.970332e-01 0.9985731540 1.255553e-05
#> PotVar0029910 2.737355e-07 1.796642e-05 0.0004785111 6.698276e-03
#> PotVar0029911 2.191529e-01 8.527789e-01 0.0001251627 7.081053e-06
#> PotVar0029912 4.237791e-07 1.936427e-04 0.9990152913 1.527610e-03
#> PotVar0029913 4.237791e-07 1.936427e-04 0.9990152913 1.527610e-03
#> PotVar0029916 5.975991e-07 3.413697e-02 0.0009341958 8.199768e-05
#> PotVar0029917 5.975991e-07 3.413697e-02 0.0009341958 8.199768e-05
#> PotVar0029921 7.698817e-02 2.961692e-05 0.0037286705 9.584710e-04
#> PotVar0029925 7.879537e-04 4.446913e-02 0.6615109878 5.486399e-01
#> ind
#> snp P2PEM11 P2PEM12 P3PEM01 P3PEM02
#> PotVar0029907 1.368283e-04 0.9997683744 4.634459e-06 1.312844e-21
#> PotVar0029908 1.368283e-04 0.9997683744 4.634459e-06 1.312844e-21
#> PotVar0029910 1.798119e-29 0.9962246408 6.324176e-03 2.482148e-32
#> PotVar0029911 9.999996e-01 0.9994947525 9.999444e-01 1.820127e-34
#> PotVar0029912 1.447534e-34 0.9999417232 2.727822e-29 6.661014e-35
#> PotVar0029913 1.447534e-34 0.9999417232 2.727822e-29 6.661014e-35
#> PotVar0029916 9.891762e-33 0.9999817188 5.153336e-08 1.141120e-30
#> PotVar0029917 9.891762e-33 0.9999817188 5.153336e-08 1.141120e-30
#> PotVar0029921 1.217055e-01 0.0003879038 9.890700e-01 9.635745e-01
#> PotVar0029925 8.707779e-12 0.7736627452 3.493043e-12 7.876422e-08
#> ind
#> snp P3PEM03 P3PEM04 P3PEM05 P3PEM06
#> PotVar0029907 1.728254e-33 4.660910e-07 3.339287e-06 9.999964e-01
#> PotVar0029908 1.728254e-33 4.660910e-07 3.339287e-06 9.999964e-01
#> PotVar0029910 9.999999e-01 4.192885e-04 1.802117e-08 1.048767e-38
#> PotVar0029911 4.871596e-46 8.031372e-06 6.682751e-10 1.000000e+00
#> PotVar0029912 1.000000e+00 3.825422e-04 1.525730e-09 8.463757e-45
#> PotVar0029913 1.000000e+00 3.825422e-04 1.525730e-09 8.463757e-45
#> PotVar0029916 9.999997e-01 2.173073e-11 8.708075e-08 1.561141e-43
#> PotVar0029917 9.999997e-01 2.173073e-11 8.708075e-08 1.561141e-43
#> PotVar0029921 9.981799e-01 9.999980e-01 9.997811e-01 9.999930e-01
#> PotVar0029925 8.262291e-01 2.693417e-02 9.432276e-04 1.468817e-14
#> ind
#> snp P3PEM07 P3PEM08 P3PEM09 P3PEM10
#> PotVar0029907 2.675968e-08 9.927335e-01 9.981448e-01 2.123198e-09
#> PotVar0029908 2.675968e-08 9.927335e-01 9.981448e-01 2.123198e-09
#> PotVar0029910 9.992676e-01 4.074643e-43 1.433585e-21 3.693989e-54
#> PotVar0029911 2.069371e-11 1.000000e+00 9.997075e-01 1.000000e+00
#> PotVar0029912 8.137741e-11 4.296030e-44 1.764399e-23 4.627273e-54
#> PotVar0029913 8.137741e-11 4.296030e-44 1.764399e-23 4.627273e-54
#> PotVar0029916 9.999982e-01 3.863315e-54 1.248558e-26 8.900336e-61
#> PotVar0029917 9.999982e-01 3.863315e-54 1.248558e-26 8.900336e-61
#> PotVar0029921 9.999996e-01 9.999998e-01 9.995932e-01 9.999999e-01
#> PotVar0029925 6.820331e-07 2.638969e-16 4.132460e-10 1.931226e-04
#> ind
#> snp P3PEM11 P3PEM12 P4PEM01 P4PEM02 P4PEM03
#> PotVar0029907 3.212425e-28 9.999989e-01 3.382681e-05 0.9999999 9.840072e-01
#> PotVar0029908 3.212425e-28 9.999989e-01 3.382681e-05 0.9999999 9.840072e-01
#> PotVar0029910 9.999916e-01 2.165413e-06 6.690592e-07 0.9998458 6.106018e-06
#> PotVar0029911 7.931739e-46 4.332109e-08 1.000000e+00 0.9999999 2.893073e-07
#> PotVar0029912 9.999999e-01 9.999996e-01 2.669139e-48 0.9999999 9.999995e-01
#> PotVar0029913 9.999999e-01 9.999996e-01 2.669139e-48 0.9999999 9.999995e-01
#> PotVar0029916 9.999975e-01 2.844980e-04 3.736565e-11 1.0000000 2.123641e-09
#> PotVar0029917 9.999975e-01 2.844980e-04 3.736565e-11 1.0000000 2.123641e-09
#> PotVar0029921 9.991864e-01 9.999041e-01 9.999990e-01 0.6942248 9.989967e-01
#> PotVar0029925 8.577112e-01 9.692899e-01 2.155298e-15 0.9887869 9.246699e-01
#> ind
#> snp P4PEM04 P4PEM05 P4PEM06 P4PEM07 P4PEM08
#> PotVar0029907 6.587422e-08 9.999974e-01 5.945274e-08 0.9999963 8.458723e-10
#> PotVar0029908 6.587422e-08 9.999974e-01 5.945274e-08 0.9999963 8.458723e-10
#> PotVar0029910 2.802615e-48 5.870631e-08 1.331085e-07 0.9999984 9.999466e-01
#> PotVar0029911 7.090652e-09 9.999999e-01 5.469861e-08 0.9999994 3.104920e-11
#> PotVar0029912 5.208288e-54 1.095114e-07 6.810045e-07 0.9999819 9.999938e-01
#> PotVar0029913 5.208288e-54 1.095114e-07 6.810045e-07 0.9999819 9.999938e-01
#> PotVar0029916 9.426201e-60 1.282270e-09 2.522058e-07 0.9999999 1.000000e+00
#> PotVar0029917 9.426201e-60 1.282270e-09 2.522058e-07 0.9999999 1.000000e+00
#> PotVar0029921 1.000000e+00 9.999953e-01 9.862311e-01 0.9999974 9.999884e-01
#> PotVar0029925 1.427248e-16 6.690733e-03 2.796232e-01 0.9848959 9.888766e-01
#> ind
#> snp P4PEM09 P4PEM10 P4PEM11 P4PEM12
#> PotVar0029907 7.974089e-06 8.647608e-10 1.975709e-13 9.999498e-01
#> PotVar0029908 7.974089e-06 8.647608e-10 1.975709e-13 9.999498e-01
#> PotVar0029910 9.999997e-01 6.043656e-10 9.742441e-09 9.999889e-01
#> PotVar0029911 1.000000e+00 2.775738e-13 8.107428e-12 1.608510e-07
#> PotVar0029912 9.696645e-06 5.208978e-15 4.895416e-10 1.033547e-05
#> PotVar0029913 9.696645e-06 5.208978e-15 4.895416e-10 1.033547e-05
#> PotVar0029916 9.999993e-01 3.531199e-06 4.131500e-09 2.115168e-08
#> PotVar0029917 9.999993e-01 3.531199e-06 4.131500e-09 2.115168e-08
#> PotVar0029921 9.999833e-01 9.999787e-01 9.999998e-01 9.999960e-01
#> PotVar0029925 6.012294e-02 7.454947e-05 6.230966e-05 1.203802e-04
#> ind
#> snp P5PEM01 P5PEM02 P5PEM03 P5PEM04 P5PEM05
#> PotVar0029907 9.990568e-01 2.180395e-23 6.156995e-16 0.9985345 0.99359884
#> PotVar0029908 9.990568e-01 2.180395e-23 6.156995e-16 0.9985345 0.99359884
#> PotVar0029910 8.344260e-29 5.970680e-21 4.070043e-17 0.9733998 0.24743231
#> PotVar0029911 9.999583e-01 3.665868e-23 4.729403e-19 0.7315864 0.98610348
#> PotVar0029912 1.322326e-31 2.179708e-25 5.831919e-18 0.5917411 0.04185586
#> PotVar0029913 1.322326e-31 2.179708e-25 5.831919e-18 0.5917411 0.04185586
#> PotVar0029916 2.924561e-27 1.248558e-26 3.828110e-16 0.6222159 0.06805677
#> PotVar0029917 2.924561e-27 1.248558e-26 3.828110e-16 0.6222159 0.06805677
#> PotVar0029921 9.999251e-01 9.988033e-01 9.961972e-01 0.9981864 0.99584427
#> PotVar0029925 4.177588e-12 1.076964e-09 5.756463e-09 0.9363274 0.02403769
#> ind
#> snp P5PEM06 P5PEM07 P5PEM08 P5PEM09 P5PEM10
#> PotVar0029907 9.995366e-01 0.62677981 9.998689e-01 1.426083e-01 1.143239e-05
#> PotVar0029908 9.995366e-01 0.62677981 9.998689e-01 1.426083e-01 1.143239e-05
#> PotVar0029910 1.291770e-08 0.91574597 1.381797e-05 2.144463e-07 3.443692e-07
#> PotVar0029911 9.999963e-01 0.03167102 9.998222e-01 2.581169e-27 2.161231e-07
#> PotVar0029912 2.633332e-07 0.77456188 6.656622e-07 2.484776e-07 1.487981e-08
#> PotVar0029913 2.633332e-07 0.77456188 6.656622e-07 2.484776e-07 1.487981e-08
#> PotVar0029916 7.174617e-07 0.99806097 2.134618e-07 9.997697e-01 6.935755e-07
#> PotVar0029917 7.174617e-07 0.99806097 2.134618e-07 9.997697e-01 6.935755e-07
#> PotVar0029921 9.994249e-01 0.98671848 9.999905e-01 9.967441e-01 9.999393e-01
#> PotVar0029925 2.944569e-04 0.89360409 4.491196e-06 2.417808e-02 2.591158e-04
#> ind
#> snp P5PEM11 P5PEM12 P6PEM01 P6PEM02
#> PotVar0029907 0.0425476146 6.654657e-08 3.112514e-26 7.399644e-04
#> PotVar0029908 0.0425476146 6.654657e-08 3.112514e-26 7.399644e-04
#> PotVar0029910 0.0010208877 1.323342e-06 4.268601e-30 7.596335e-19
#> PotVar0029911 0.0001861230 3.321351e-08 1.385344e-33 9.997814e-01
#> PotVar0029912 0.0006215151 1.839196e-08 1.200295e-32 5.737523e-22
#> PotVar0029913 0.0006215151 1.839196e-08 1.200295e-32 5.737523e-22
#> PotVar0029916 0.0120249972 5.998136e-04 5.577321e-31 3.839383e-25
#> PotVar0029917 0.0120249972 5.998136e-04 5.577321e-31 3.839383e-25
#> PotVar0029921 0.9990656216 9.922081e-01 9.374133e-01 9.563485e-01
#> PotVar0029925 0.4292925541 2.348440e-03 5.078777e-10 1.665538e-10
#> ind
#> snp P6PEM03 P6PEM04 P6PEM05 P6PEM06
#> PotVar0029907 1.893992e-03 3.343852e-08 5.720517e-36 0.0007654931
#> PotVar0029908 1.893992e-03 3.343852e-08 5.720517e-36 0.0007654931
#> PotVar0029910 2.158383e-04 4.433131e-32 2.046976e-41 0.0005335707
#> PotVar0029911 9.987846e-01 5.117839e-08 5.105415e-10 0.0065030284
#> PotVar0029912 2.825350e-17 4.186329e-38 2.074271e-42 0.0029602366
#> PotVar0029913 2.825350e-17 4.186329e-38 2.074271e-42 0.0029602366
#> PotVar0029916 2.325967e-01 1.751117e-38 3.388036e-41 0.0070635618
#> PotVar0029917 2.325967e-01 1.751117e-38 3.388036e-41 0.0070635618
#> PotVar0029921 9.674449e-01 9.999563e-01 9.998149e-01 0.5762005766
#> PotVar0029925 6.752449e-08 6.583719e-14 5.166325e-11 0.4528636326
#> ind
#> snp P6PEM07 P6PEM08 P6PEM09 P6PEM10 P6PEM11
#> PotVar0029907 8.197132e-05 0.0001666536 1.584540e-04 0.9999975 9.945986e-01
#> PotVar0029908 8.197132e-05 0.0001666536 1.584540e-04 0.9999975 9.945986e-01
#> PotVar0029910 9.157478e-26 0.9993872065 3.483572e-02 0.9999954 1.748898e-19
#> PotVar0029911 1.104123e-05 0.9992310572 1.662376e-07 0.9999984 1.765898e-03
#> PotVar0029912 1.099228e-28 0.0291865478 3.440743e-05 0.9999895 2.597183e-21
#> PotVar0029913 1.099228e-28 0.0291865478 3.440743e-05 0.9999895 2.597183e-21
#> PotVar0029916 2.029968e-26 0.9968838794 2.529877e-05 0.9999999 4.308502e-22
#> PotVar0029917 2.029968e-26 0.9968838794 2.529877e-05 0.9999999 4.308502e-22
#> PotVar0029921 9.998245e-01 0.9993807865 5.456951e-01 0.9998375 9.434940e-01
#> PotVar0029925 1.400235e-11 0.0024351538 7.318165e-02 0.4254639 2.081310e-10
#> ind
#> snp P6PEM12 P7PEM01 P7PEM02 P7PEM03 P7PEM04
#> PotVar0029907 9.979085e-01 2.710614e-02 8.917437e-01 0.972158622 2.800255e-13
#> PotVar0029908 9.979085e-01 2.710614e-02 8.917437e-01 0.972158622 2.800255e-13
#> PotVar0029910 6.199729e-19 6.761649e-06 2.270063e-12 0.497625354 5.251513e-03
#> PotVar0029911 9.999202e-01 2.063379e-02 9.535268e-01 0.975462399 1.771372e-17
#> PotVar0029912 8.311794e-26 3.979253e-09 7.637935e-12 0.001840144 9.881674e-05
#> PotVar0029913 8.311794e-26 3.979253e-09 7.637935e-12 0.001840144 9.881674e-05
#> PotVar0029916 1.270772e-19 1.260076e-09 1.583413e-09 0.324846157 5.530929e-04
#> PotVar0029917 1.270772e-19 1.260076e-09 1.583413e-09 0.324846157 5.530929e-04
#> PotVar0029921 9.978454e-01 5.555471e-01 9.648831e-01 0.748739958 8.660690e-01
#> PotVar0029925 4.645094e-10 2.845032e-05 3.003869e-06 0.098258240 2.091439e-03
#> ind
#> snp P7PEM05 P7PEM06 P7PEM07 P7PEM08 P7PEM09
#> PotVar0029907 0.9828704 0.882936873 6.442580e-01 9.975618e-01 0.9824497876
#> PotVar0029908 0.9828704 0.882936873 6.442580e-01 9.975618e-01 0.9824497876
#> PotVar0029910 0.9775018 0.047756176 4.890274e-08 9.922759e-01 0.9892355453
#> PotVar0029911 0.9620858 0.993555812 3.975716e-01 1.532085e-05 0.0004741908
#> PotVar0029912 0.9889365 0.006258374 4.004022e-10 5.212650e-05 0.9970334113
#> PotVar0029913 0.9889365 0.006258374 4.004022e-10 5.212650e-05 0.9970334113
#> PotVar0029916 0.9902429 0.057425576 1.544024e-11 9.998750e-01 0.8059359948
#> PotVar0029917 0.9902429 0.057425576 1.544024e-11 9.998750e-01 0.8059359948
#> PotVar0029921 0.9994746 0.872847425 9.107833e-01 9.911673e-01 0.9953128475
#> PotVar0029925 0.9544385 0.004501980 2.086632e-01 8.076672e-05 0.9344450656
#> ind
#> snp P7PEM10 P7PEM11 P7PEM12
#> PotVar0029907 0.8540200 5.386214e-06 1.825695e-05
#> PotVar0029908 0.8540200 5.386214e-06 1.825695e-05
#> PotVar0029910 0.9997105 1.936562e-06 5.024759e-04
#> PotVar0029911 0.9999336 1.282516e-05 9.957966e-01
#> PotVar0029912 0.9999986 3.010525e-06 8.217825e-13
#> PotVar0029913 0.9999986 3.010525e-06 8.217825e-13
#> PotVar0029916 0.9999966 8.937749e-07 1.767034e-03
#> PotVar0029917 0.9999966 8.937749e-07 1.767034e-03
#> PotVar0029921 0.9998383 9.998383e-01 6.020028e-01
#> PotVar0029925 0.9673865 8.136770e-04 2.449328e-07
#>
#> , , variable = logL_3
#>
#> ind
#> snp P1PEM01 P1PEM02 P1PEM03 P1PEM04
#> PotVar0029907 5.469583e-04 9.988391e-01 1.362611e-05 1.893962e-02
#> PotVar0029908 5.469583e-04 9.988391e-01 1.362611e-05 1.893962e-02
#> PotVar0029910 9.901677e-01 1.218613e-05 9.996069e-01 5.748034e-08
#> PotVar0029911 1.073710e-04 9.999166e-01 1.174935e-22 1.242284e-09
#> PotVar0029912 3.286578e-05 2.585765e-06 9.999999e-01 2.264599e-09
#> PotVar0029913 3.286578e-05 2.585765e-06 9.999999e-01 2.264599e-09
#> PotVar0029916 9.753275e-01 1.550731e-06 1.000000e+00 2.827708e-09
#> PotVar0029917 9.753275e-01 1.550731e-06 1.000000e+00 2.827708e-09
#> PotVar0029921 9.806958e-01 9.054282e-01 9.997324e-01 9.968543e-01
#> PotVar0029925 6.866890e-02 3.474143e-03 9.875555e-01 1.687241e-03
#> ind
#> snp P1PEM05 P1PEM06 P1PEM07 P1PEM08
#> PotVar0029907 3.880976e-06 5.155176e-02 8.107065e-06 1.768699e-12
#> PotVar0029908 3.880976e-06 5.155176e-02 8.107065e-06 1.768699e-12
#> PotVar0029910 9.999709e-01 5.309446e-02 1.329154e-04 1.355234e-09
#> PotVar0029911 5.660318e-18 5.628134e-08 5.149374e-17 4.764210e-12
#> PotVar0029912 1.000000e+00 1.117411e-02 9.458678e-01 2.093049e-14
#> PotVar0029913 1.000000e+00 1.117411e-02 9.458678e-01 2.093049e-14
#> PotVar0029916 3.016647e-08 7.445407e-02 2.722569e-07 2.119672e-07
#> PotVar0029917 3.016647e-08 7.445407e-02 2.722569e-07 2.119672e-07
#> PotVar0029921 9.997010e-01 8.074928e-01 9.986008e-01 9.972605e-01
#> PotVar0029925 4.787723e-04 7.668152e-07 8.667666e-01 7.300864e-04
#> ind
#> snp P1PEM09 P1PEM10 P1PEM11 P1PEM12
#> PotVar0029907 1.119621e-01 9.981155e-01 3.650208e-05 5.863800e-06
#> PotVar0029908 1.119621e-01 9.981155e-01 3.650208e-05 5.863800e-06
#> PotVar0029910 1.957578e-09 9.990247e-01 4.814005e-10 4.471126e-07
#> PotVar0029911 6.035152e-02 4.642853e-06 9.999995e-01 1.883361e-07
#> PotVar0029912 6.013319e-08 1.045852e-13 7.711793e-11 2.380929e-08
#> PotVar0029913 6.013319e-08 1.045852e-13 7.711793e-11 2.380929e-08
#> PotVar0029916 2.247261e-09 3.855730e-13 9.996694e-01 2.073234e-05
#> PotVar0029917 2.247261e-09 3.855730e-13 9.996694e-01 2.073234e-05
#> PotVar0029921 9.960431e-01 9.997324e-01 9.193437e-01 9.732952e-01
#> PotVar0029925 1.134225e-03 2.233962e-05 9.635509e-01 1.067096e-03
#> ind
#> snp P2PEM01 P2PEM02 P2PEM03 P2PEM04
#> PotVar0029907 1.072275e-02 9.894345e-01 1.177095e-11 2.271508e-12
#> PotVar0029908 1.072275e-02 9.894345e-01 1.177095e-11 2.271508e-12
#> PotVar0029910 2.245191e-19 2.127921e-11 4.299035e-08 9.348828e-01
#> PotVar0029911 6.162404e-23 9.999966e-01 1.247310e-12 2.129976e-14
#> PotVar0029912 1.293255e-06 1.636553e-12 6.479384e-09 9.995641e-01
#> PotVar0029913 1.293255e-06 1.636553e-12 6.479384e-09 9.995641e-01
#> PotVar0029916 2.122547e-26 2.579178e-12 3.968718e-10 8.935975e-01
#> PotVar0029917 2.122547e-26 2.579178e-12 3.968718e-10 8.935975e-01
#> PotVar0029921 9.999800e-01 9.810638e-01 9.845112e-01 9.942625e-01
#> PotVar0029925 8.718784e-01 8.656336e-05 1.206171e-03 7.673306e-01
#> ind
#> snp P2PEM05 P2PEM06 P2PEM07 P2PEM08 P2PEM09
#> PotVar0029907 1.920812e-08 0.9998100 2.259415e-05 3.067893e-05 3.560902e-05
#> PotVar0029908 1.920812e-08 0.9998100 2.259415e-05 3.067893e-05 3.560902e-05
#> PotVar0029910 1.589066e-08 0.9999944 1.999836e-03 9.999820e-01 1.945180e-15
#> PotVar0029911 1.200617e-06 0.0206515 6.003182e-05 1.472210e-01 2.919086e-17
#> PotVar0029912 4.157295e-11 0.9996517 2.414698e-03 9.998064e-01 2.663970e-06
#> PotVar0029913 4.157295e-11 0.9996517 2.414698e-03 9.998064e-01 2.663970e-06
#> PotVar0029916 2.579178e-12 0.9998784 2.712123e-03 9.658630e-01 1.364594e-15
#> PotVar0029917 2.579178e-12 0.9998784 2.712123e-03 9.658630e-01 1.364594e-15
#> PotVar0029921 9.991661e-01 0.8569229 8.549098e-01 9.520838e-01 9.962707e-01
#> PotVar0029925 8.287837e-05 0.9717645 6.035905e-02 9.551044e-01 3.379542e-01
#> ind
#> snp P2PEM10 P2PEM11 P2PEM12 P3PEM01
#> PotVar0029907 6.726446e-20 9.998632e-01 2.124496e-04 9.999954e-01
#> PotVar0029908 6.726446e-20 9.998632e-01 2.124496e-04 9.999954e-01
#> PotVar0029910 9.933017e-01 9.103652e-12 3.774994e-03 9.936758e-01
#> PotVar0029911 8.817735e-22 3.405893e-07 5.047542e-04 1.120990e-07
#> PotVar0029912 9.984724e-01 5.939550e-15 5.361657e-05 1.099891e-12
#> PotVar0029913 9.984724e-01 5.939550e-15 5.361657e-05 1.099891e-12
#> PotVar0029916 9.999180e-01 2.621782e-13 1.588987e-08 9.999999e-01
#> PotVar0029917 9.999180e-01 2.621782e-13 1.588987e-08 9.999999e-01
#> PotVar0029921 9.990415e-01 8.782945e-01 9.996096e-01 1.092992e-02
#> PotVar0029925 4.513262e-01 3.645426e-05 2.260831e-01 2.494286e-05
#> ind
#> snp P3PEM02 P3PEM03 P3PEM04 P3PEM05
#> PotVar0029907 3.938369e-40 3.171108e-61 9.999995e-01 0.9999966607
#> PotVar0029908 3.938369e-40 3.171108e-61 9.999995e-01 0.9999966607
#> PotVar0029910 5.795276e-58 4.752025e-09 9.995807e-01 0.9999999820
#> PotVar0029911 6.080155e-63 6.960715e-88 9.999920e-01 0.9999999993
#> PotVar0029912 3.655101e-63 3.855518e-10 9.996175e-01 0.9999999985
#> PotVar0029913 3.655101e-63 3.855518e-10 9.996175e-01 0.9999999985
#> PotVar0029916 1.984461e-57 1.028509e-09 1.000000e+00 0.9999999129
#> PotVar0029917 1.984461e-57 1.028509e-09 1.000000e+00 0.9999999129
#> PotVar0029921 3.642546e-02 1.820112e-03 1.937572e-06 0.0002189147
#> PotVar0029925 6.951888e-16 1.736831e-01 9.729917e-01 0.9972917678
#> ind
#> snp P3PEM06 P3PEM07 P3PEM08 P3PEM09
#> PotVar0029907 7.099066e-09 8.158240e-28 7.266541e-03 1.150965e-04
#> PotVar0029908 7.099066e-09 8.158240e-28 7.266541e-03 1.150965e-04
#> PotVar0029910 7.416692e-17 3.407202e-12 8.480557e-19 1.957578e-09
#> PotVar0029911 1.651643e-08 2.839113e-37 5.097266e-11 2.862011e-04
#> PotVar0029912 2.138575e-19 1.000000e+00 4.686513e-18 3.307932e-10
#> PotVar0029913 2.138575e-19 1.000000e+00 4.686513e-18 3.307932e-10
#> PotVar0029916 6.258082e-19 1.828205e-06 1.019532e-22 1.345697e-11
#> PotVar0029917 6.258082e-19 1.828205e-06 1.019532e-22 1.345697e-11
#> PotVar0029921 5.154645e-08 2.943871e-08 1.729015e-07 3.803786e-04
#> PotVar0029925 2.544036e-06 4.179341e-01 4.714169e-07 1.800516e-04
#> ind
#> snp P3PEM10 P3PEM11 P3PEM12 P4PEM01
#> PotVar0029907 1.000000e+00 7.967423e-55 5.292604e-07 9.999662e-01
#> PotVar0029908 1.000000e+00 7.967423e-55 5.292604e-07 9.999662e-01
#> PotVar0029910 1.042254e-23 8.342801e-06 7.771730e-24 9.999993e-01
#> PotVar0029911 2.287750e-11 1.247211e-82 5.729353e-29 9.728584e-11
#> PotVar0029912 1.320523e-21 3.007586e-09 9.549215e-09 6.266989e-21
#> PotVar0029913 1.320523e-21 3.007586e-09 9.549215e-09 6.266989e-21
#> PotVar0029916 1.109567e-25 2.486330e-06 7.266567e-22 1.000000e+00
#> PotVar0029917 1.109567e-25 2.486330e-06 7.266567e-22 1.000000e+00
#> PotVar0029921 5.607729e-10 8.135873e-04 9.592091e-05 1.022353e-06
#> PotVar0029925 9.967942e-01 1.422286e-01 3.066776e-03 1.138418e-06
#> ind
#> snp P4PEM02 P4PEM03 P4PEM04 P4PEM05
#> PotVar0029907 1.056366e-07 1.599277e-02 9.999999e-01 2.469305e-06
#> PotVar0029908 1.056366e-07 1.599277e-02 9.999999e-01 2.469305e-06
#> PotVar0029910 3.791981e-14 1.721086e-22 4.375871e-21 9.999999e-01
#> PotVar0029911 8.548931e-14 2.786387e-26 1.000000e+00 4.027183e-10
#> PotVar0029912 1.091390e-13 4.378459e-07 1.923104e-23 9.999999e-01
#> PotVar0029913 1.091390e-13 4.378459e-07 1.923104e-23 9.999999e-01
#> PotVar0029916 1.288078e-14 4.159253e-30 4.139720e-26 1.000000e+00
#> PotVar0029917 1.288078e-14 4.159253e-30 4.139720e-26 1.000000e+00
#> PotVar0029921 3.057752e-01 1.003299e-03 6.568225e-09 4.638832e-06
#> PotVar0029925 9.411913e-03 7.493424e-02 3.640912e-07 9.930614e-01
#> ind
#> snp P4PEM06 P4PEM07 P4PEM08 P4PEM09
#> PotVar0029907 1.630248e-27 1.541553e-07 5.248770e-34 9.999920e-01
#> PotVar0029908 1.630248e-27 1.541553e-07 5.248770e-34 9.999920e-01
#> PotVar0029910 1.767397e-26 3.012137e-07 5.344635e-05 2.525301e-07
#> PotVar0029911 6.625491e-29 2.720579e-08 1.346217e-38 1.407981e-08
#> PotVar0029912 1.729771e-26 4.784369e-10 6.226927e-06 9.999903e-01
#> PotVar0029913 1.729771e-26 4.784369e-10 6.226927e-06 9.999903e-01
#> PotVar0029916 2.769526e-30 2.377087e-08 2.554002e-09 7.393589e-07
#> PotVar0029917 2.769526e-30 2.377087e-08 2.554002e-09 7.393589e-07
#> PotVar0029921 1.376894e-02 2.504286e-06 1.161264e-05 4.834980e-09
#> PotVar0029925 2.622456e-05 1.261768e-02 9.151367e-03 9.398497e-01
#> ind
#> snp P4PEM10 P4PEM11 P4PEM12 P5PEM01
#> PotVar0029907 1.000000e+00 3.486803e-42 4.339199e-08 9.428638e-04
#> PotVar0029908 1.000000e+00 3.486803e-42 4.339199e-08 9.428638e-04
#> PotVar0029910 6.669156e-37 1.000000e+00 4.754453e-09 1.526021e-12
#> PotVar0029911 3.185161e-47 7.436101e-45 3.798825e-28 3.983924e-09
#> PotVar0029912 1.000000e+00 1.000000e+00 9.999897e-01 1.251419e-12
#> PotVar0029913 1.000000e+00 1.000000e+00 9.999897e-01 1.251419e-12
#> PotVar0029916 9.199865e-32 1.000000e+00 1.000000e+00 7.220601e-12
#> PotVar0029917 9.199865e-32 1.000000e+00 1.000000e+00 7.220601e-12
#> PotVar0029921 2.129713e-05 1.540637e-07 3.908210e-06 2.606138e-06
#> PotVar0029925 9.952741e-01 9.938352e-01 9.810296e-01 2.686902e-05
#> ind
#> snp P5PEM02 P5PEM03 P5PEM04 P5PEM05
#> PotVar0029907 2.550151e-10 4.059035e-07 4.439272e-04 6.375716e-03
#> PotVar0029908 2.550151e-10 4.059035e-07 4.439272e-04 6.375716e-03
#> PotVar0029910 3.597784e-09 1.529388e-07 2.655596e-02 7.525676e-01
#> PotVar0029911 4.404316e-10 2.414056e-08 2.684135e-01 7.186094e-06
#> PotVar0029912 5.106016e-11 7.132100e-08 4.082589e-01 9.581441e-01
#> PotVar0029913 5.106016e-11 7.132100e-08 4.082589e-01 9.581441e-01
#> PotVar0029916 1.345697e-11 3.877030e-07 1.583731e-07 9.319432e-01
#> PotVar0029917 1.345697e-11 3.877030e-07 1.583731e-07 9.319432e-01
#> PotVar0029921 4.039244e-06 3.473400e-03 1.416772e-03 3.196536e-04
#> PotVar0029925 2.671559e-04 5.318651e-04 5.961354e-02 9.752878e-01
#> ind
#> snp P5PEM06 P5PEM07 P5PEM08 P5PEM09
#> PotVar0029907 1.100436e-05 3.191904e-05 2.295006e-08 4.006645e-09
#> PotVar0029908 1.100436e-05 3.191904e-05 2.295006e-08 4.006645e-09
#> PotVar0029910 1.000000e+00 8.423512e-02 9.999862e-01 9.999998e-01
#> PotVar0029911 3.665338e-07 2.326585e-09 3.729982e-09 2.761362e-50
#> PotVar0029912 9.999997e-01 2.254172e-01 9.999993e-01 9.999998e-01
#> PotVar0029913 9.999997e-01 2.254172e-01 9.999993e-01 9.999998e-01
#> PotVar0029916 9.999993e-01 1.571399e-03 9.999998e-01 2.290473e-04
#> PotVar0029917 9.999993e-01 1.571399e-03 9.999998e-01 2.290473e-04
#> PotVar0029921 3.009873e-07 3.934534e-04 2.283151e-07 3.255791e-03
#> PotVar0029925 9.753668e-01 9.343387e-02 5.253210e-01 9.753777e-01
#> ind
#> snp P5PEM10 P5PEM11 P5PEM12 P6PEM01
#> PotVar0029907 9.999886e-01 1.384845e-09 9.999999e-01 1.488226e-11
#> PotVar0029908 9.999886e-01 1.384845e-09 9.999999e-01 1.488226e-11
#> PotVar0029910 9.999997e-01 1.969306e-13 9.999987e-01 4.215609e-13
#> PotVar0029911 9.999998e-01 1.803930e-15 1.000000e+00 1.549657e-14
#> PotVar0029912 1.000000e+00 1.142797e-14 1.000000e+00 3.984815e-14
#> PotVar0029913 1.000000e+00 1.142797e-14 1.000000e+00 3.984815e-14
#> PotVar0029916 9.999993e-01 1.548735e-11 9.994002e-01 1.504118e-12
#> PotVar0029917 9.999993e-01 1.548735e-11 9.994002e-01 1.504118e-12
#> PotVar0029921 5.786776e-05 8.914277e-04 2.789495e-08 6.258669e-02
#> PotVar0029925 9.792133e-01 4.673239e-04 9.963662e-01 1.483170e-03
#> ind
#> snp P6PEM02 P6PEM03 P6PEM04 P6PEM05
#> PotVar0029907 9.992600e-01 9.981060e-01 1.000000e+00 8.088141e-16
#> PotVar0029908 9.992600e-01 9.981060e-01 1.000000e+00 8.088141e-16
#> PotVar0029910 2.828366e-08 9.997842e-01 5.810713e-14 4.772063e-18
#> PotVar0029911 1.687341e-05 6.937642e-04 9.999999e-01 1.000000e+00
#> PotVar0029912 1.448537e-09 1.385256e-07 1.752041e-16 2.554815e-17
#> PotVar0029913 1.448537e-09 1.385256e-07 1.752041e-16 2.554815e-17
#> PotVar0029916 5.836101e-11 7.674032e-01 1.009943e-16 5.325599e-17
#> PotVar0029917 5.836101e-11 7.674032e-01 1.009943e-16 5.325599e-17
#> PotVar0029921 3.429024e-06 1.644136e-04 4.361645e-05 1.850674e-04
#> PotVar0029925 1.237428e-04 1.454976e-03 4.764406e-06 1.357381e-03
#> ind
#> snp P6PEM06 P6PEM07 P6PEM08 P6PEM09
#> PotVar0029907 1.586339e-11 7.556162e-17 9.998333e-01 5.331821e-15
#> PotVar0029908 1.586339e-11 7.556162e-17 9.998333e-01 5.331821e-15
#> PotVar0029910 8.251291e-13 3.122365e-11 4.110436e-06 9.651643e-01
#> PotVar0029911 1.285800e-10 4.128032e-21 1.364216e-06 7.576647e-22
#> PotVar0029912 4.055465e-11 1.997414e-12 9.708135e-01 9.999656e-01
#> PotVar0029913 4.055465e-11 1.997414e-12 9.708135e-01 9.999656e-01
#> PotVar0029916 3.457118e-11 1.657407e-11 1.025566e-04 9.999747e-01
#> PotVar0029917 3.457118e-11 1.657407e-11 1.025566e-04 9.999747e-01
#> PotVar0029921 4.237880e-01 1.669200e-04 1.316622e-04 4.543044e-01
#> PotVar0029925 1.093896e-03 4.439736e-05 9.865618e-01 9.265867e-01
#> ind
#> snp P6PEM10 P6PEM11 P6PEM12 P7PEM01
#> PotVar0029907 4.662330e-08 5.660818e-05 2.038226e-03 0.9728934225
#> PotVar0029908 4.662330e-08 5.660818e-05 2.038226e-03 0.9728934225
#> PotVar0029910 4.585140e-06 1.515348e-08 3.142005e-07 0.0920856949
#> PotVar0029911 1.615161e-06 3.418557e-14 4.121234e-06 0.9793658373
#> PotVar0029912 1.053324e-05 2.745453e-09 3.386222e-11 0.0003502431
#> PotVar0029913 1.053324e-05 2.745453e-09 3.386222e-11 0.0003502431
#> PotVar0029916 8.657100e-11 1.169010e-09 1.310091e-08 0.0018667525
#> PotVar0029917 8.657100e-11 1.169010e-09 1.310091e-08 0.0018667525
#> PotVar0029921 1.625447e-04 5.650511e-02 1.950512e-03 0.4443796671
#> PotVar0029925 5.072959e-05 1.356715e-04 1.889452e-04 0.0165792124
#> ind
#> snp P7PEM02 P7PEM03 P7PEM04 P7PEM05
#> PotVar0029907 1.721935e-04 5.634694e-07 7.642782e-25 1.984641e-06
#> PotVar0029908 1.721935e-04 5.634694e-07 7.642782e-25 1.984641e-06
#> PotVar0029910 1.526343e-05 5.023746e-01 8.298039e-11 2.249780e-02
#> PotVar0029911 4.633517e-02 6.081908e-07 1.794766e-32 3.791415e-02
#> PotVar0029912 2.601628e-05 9.981599e-01 8.255955e-15 1.106319e-02
#> PotVar0029913 2.601628e-05 9.981599e-01 8.255955e-15 1.106319e-02
#> PotVar0029916 2.304118e-04 6.751538e-01 3.025258e-13 3.164918e-07
#> PotVar0029917 2.304118e-04 6.751538e-01 3.025258e-13 3.164918e-07
#> PotVar0029921 3.351057e-02 2.512599e-01 1.326146e-01 2.501845e-04
#> PotVar0029925 6.759600e-03 9.015926e-01 3.041128e-08 3.576251e-02
#> ind
#> snp P7PEM06 P7PEM07 P7PEM08 P7PEM09
#> PotVar0029907 4.905559e-04 0.3545462200 2.510281e-05 7.355920e-05
#> PotVar0029908 4.905559e-04 0.3545462200 2.510281e-05 7.355920e-05
#> PotVar0029910 9.522438e-01 0.0009794977 7.724023e-03 1.065092e-02
#> PotVar0029911 7.195233e-05 0.0001190381 3.829503e-20 9.754453e-13
#> PotVar0029912 9.937416e-01 0.0001350663 9.999479e-01 2.778288e-03
#> PotVar0029913 9.937416e-01 0.0001350663 9.999479e-01 2.778288e-03
#> PotVar0029916 9.425744e-01 0.0000333335 7.281109e-08 1.417703e-06
#> PotVar0029917 9.425744e-01 0.0000333335 7.281109e-08 1.417703e-06
#> PotVar0029921 1.271509e-01 0.0455309230 1.019968e-07 1.106786e-03
#> PotVar0029925 9.845659e-01 0.7905879553 8.982969e-01 5.698535e-02
#> ind
#> snp P7PEM10 P7PEM11 P7PEM12
#> PotVar0029907 1.459799e-01 2.201413e-20 9.995416e-01
#> PotVar0029908 1.459799e-01 2.201413e-20 9.995416e-01
#> PotVar0029910 2.895069e-04 9.999981e-01 9.994975e-01
#> PotVar0029911 6.641458e-05 1.594913e-22 1.891963e-03
#> PotVar0029912 1.198641e-06 9.999970e-01 1.026859e-05
#> PotVar0029913 1.198641e-06 9.999970e-01 1.026859e-05
#> PotVar0029916 2.795485e-08 9.999991e-01 9.982327e-01
#> PotVar0029917 2.795485e-08 9.999991e-01 9.982327e-01
#> PotVar0029921 1.604621e-04 1.604621e-04 1.317123e-04
#> PotVar0029925 3.036610e-02 9.942297e-01 2.456713e-03
#>
#> , , variable = logL_4
#>
#> ind
#> snp P1PEM01 P1PEM02 P1PEM03 P1PEM04
#> PotVar0029907 9.994530e-01 2.053004e-06 4.746699e-39 3.920856e-29
#> PotVar0029908 9.994530e-01 2.053004e-06 4.746699e-39 3.920856e-29
#> PotVar0029910 4.938744e-12 9.999878e-01 3.681433e-20 3.579872e-44
#> PotVar0029911 3.858234e-29 5.882379e-08 1.000601e-78 3.672042e-54
#> PotVar0029912 9.999671e-01 9.999974e-01 1.026249e-16 2.394123e-52
#> PotVar0029913 9.999671e-01 9.999974e-01 1.026249e-16 2.394123e-52
#> PotVar0029916 2.018887e-12 9.999984e-01 1.343306e-14 4.038998e-52
#> PotVar0029917 2.018887e-12 9.999984e-01 1.343306e-14 4.038998e-52
#> PotVar0029921 1.379903e-04 3.260692e-07 8.792327e-07 1.642704e-10
#> PotVar0029925 9.313249e-01 9.965253e-01 5.310902e-04 5.700930e-11
#> ind
#> snp P1PEM05 P1PEM06 P1PEM07 P1PEM08
#> PotVar0029907 5.102517e-42 1.629649e-12 8.009544e-37 1.000000e+00
#> PotVar0029908 5.102517e-42 1.629649e-12 8.009544e-37 1.000000e+00
#> PotVar0029910 1.073462e-17 6.832210e-15 3.426325e-31 1.753450e-50
#> PotVar0029911 5.719962e-70 1.631967e-31 4.493471e-61 5.442236e-64
#> PotVar0029912 8.848338e-15 9.905439e-20 5.614897e-21 1.000000e+00
#> PotVar0029913 8.848338e-15 9.905439e-20 5.614897e-21 1.000000e+00
#> PotVar0029916 2.894048e-51 6.571867e-17 6.495044e-43 1.136011e-50
#> PotVar0029917 2.894048e-51 6.571867e-17 6.495044e-43 1.136011e-50
#> PotVar0029921 1.022681e-08 4.209280e-02 1.150352e-04 1.787282e-10
#> PotVar0029925 5.236368e-12 3.666614e-14 6.838239e-05 9.992699e-01
#> ind
#> snp P1PEM09 P1PEM10 P1PEM11 P1PEM12
#> PotVar0029907 6.497540e-21 2.618020e-20 9.999635e-01 0.9999941362
#> PotVar0029908 6.497540e-21 2.618020e-20 9.999635e-01 0.9999941362
#> PotVar0029910 1.000000e+00 6.285649e-22 1.000000e+00 0.9999995529
#> PotVar0029911 1.968747e-30 2.507280e-45 8.432115e-15 0.9999998117
#> PotVar0029912 9.999999e-01 1.000000e+00 1.000000e+00 0.9999999762
#> PotVar0029913 9.999999e-01 1.000000e+00 1.000000e+00 0.9999999762
#> PotVar0029916 1.000000e+00 1.000000e+00 3.932080e-15 0.9999792677
#> PotVar0029917 1.000000e+00 1.000000e+00 3.932080e-15 0.9999792677
#> PotVar0029921 5.910267e-05 8.792327e-07 2.512249e-08 0.0001122982
#> PotVar0029925 9.988657e-01 9.999777e-01 3.293717e-04 0.9989328728
#> ind
#> snp P2PEM01 P2PEM02 P2PEM03 P2PEM04
#> PotVar0029907 5.465921e-34 3.197368e-22 4.962511e-45 2.714667e-43
#> PotVar0029908 5.465921e-34 3.197368e-22 4.962511e-45 2.714667e-43
#> PotVar0029910 4.960209e-68 1.000000e+00 1.000000e+00 5.549747e-14
#> PotVar0029911 6.902976e-82 2.047605e-18 6.639276e-52 1.895477e-51
#> PotVar0029912 1.385345e-47 1.000000e+00 1.000000e+00 3.024805e-10
#> PotVar0029913 1.385345e-47 1.000000e+00 1.000000e+00 3.024805e-10
#> PotVar0029916 3.398255e-82 1.000000e+00 1.000000e+00 2.109394e-16
#> PotVar0029917 3.398255e-82 1.000000e+00 1.000000e+00 2.109394e-16
#> PotVar0029921 5.294238e-08 3.143008e-10 2.250093e-08 2.007528e-06
#> PotVar0029925 3.284690e-05 9.999134e-01 9.987938e-01 3.265880e-04
#> ind
#> snp P2PEM05 P2PEM06 P2PEM07 P2PEM08
#> PotVar0029907 5.065091e-46 1.066185e-07 7.780374e-23 5.591877e-34
#> PotVar0029908 5.065091e-46 1.066185e-07 7.780374e-23 5.591877e-34
#> PotVar0029910 1.000000e+00 5.598053e-09 9.979999e-01 1.432205e-12
#> PotVar0029911 5.104406e-44 1.951734e-27 8.954377e-25 6.118646e-27
#> PotVar0029912 1.000000e+00 5.944629e-14 9.975849e-01 4.256387e-15
#> PotVar0029913 1.000000e+00 5.944629e-14 9.975849e-01 4.256387e-15
#> PotVar0029916 1.000000e+00 5.623807e-10 9.972873e-01 1.530077e-20
#> PotVar0029917 1.000000e+00 5.623807e-10 9.972873e-01 1.530077e-20
#> PotVar0029921 2.130397e-09 1.596507e-08 6.798611e-02 4.788656e-02
#> PotVar0029925 9.999171e-01 2.104937e-03 9.388528e-01 4.261409e-04
#> ind
#> snp P2PEM09 P2PEM10 P2PEM11 P2PEM12
#> PotVar0029907 2.991607e-34 2.596856e-67 1.939290e-22 5.205373e-34
#> PotVar0029908 2.991607e-34 2.596856e-67 1.939290e-22 5.205373e-34
#> PotVar0029910 1.267339e-54 1.409661e-23 1.000000e+00 1.049472e-29
#> PotVar0029911 1.373275e-63 1.125239e-75 2.625151e-51 3.934349e-36
#> PotVar0029912 1.206173e-39 6.361872e-25 1.000000e+00 9.178510e-38
#> PotVar0029913 1.206173e-39 6.361872e-25 1.000000e+00 9.178510e-38
#> PotVar0029916 8.690729e-59 2.513819e-24 1.000000e+00 1.392555e-50
#> PotVar0029917 8.690729e-59 2.513819e-24 1.000000e+00 1.392555e-50
#> PotVar0029921 6.502590e-07 1.957944e-09 1.793531e-13 2.539669e-06
#> PotVar0029925 4.666626e-06 2.860816e-06 9.999635e-01 7.498534e-07
#> ind
#> snp P3PEM01 P3PEM02 P3PEM03 P3PEM04
#> PotVar0029907 8.839562e-12 1.396050e-90 5.356068e-127 2.495631e-19
#> PotVar0029908 8.839562e-12 1.396050e-90 5.356068e-127 2.495631e-19
#> PotVar0029910 4.655130e-21 2.184508e-116 1.467164e-52 2.095437e-27
#> PotVar0029911 1.983572e-48 2.410563e-133 9.205355e-179 2.653108e-31
#> PotVar0029912 1.000000e+00 1.515538e-130 2.091336e-60 6.744242e-32
#> PotVar0029913 1.000000e+00 1.515538e-130 2.091336e-60 6.744242e-32
#> PotVar0029916 6.176844e-13 3.263442e-122 2.659385e-57 6.467380e-17
#> PotVar0029917 6.176844e-13 3.263442e-122 2.659385e-57 6.467380e-17
#> PotVar0029921 4.009915e-18 1.656746e-16 1.928223e-22 4.895873e-29
#> PotVar0029925 9.999751e-01 2.643871e-27 1.975995e-07 7.411084e-05
#> ind
#> snp P3PEM05 P3PEM06 P3PEM07 P3PEM08
#> PotVar0029907 5.660180e-22 5.827772e-53 2.414630e-85 9.213556e-41
#> PotVar0029908 5.660180e-22 5.827772e-53 2.414630e-85 9.213556e-41
#> PotVar0029910 2.834740e-17 1.000000e+00 1.028427e-58 1.000000e+00
#> PotVar0029911 2.816523e-19 2.046804e-57 1.337945e-109 6.312588e-66
#> PotVar0029912 9.394087e-19 1.000000e+00 1.170087e-20 1.000000e+00
#> PotVar0029913 9.394087e-19 1.000000e+00 1.170087e-20 1.000000e+00
#> PotVar0029916 6.633935e-24 1.000000e+00 5.014753e-53 1.000000e+00
#> PotVar0029917 6.633935e-24 1.000000e+00 5.014753e-53 1.000000e+00
#> PotVar0029921 4.519562e-24 3.376248e-32 1.732363e-33 5.374128e-33
#> PotVar0029925 1.765005e-03 9.999975e-01 5.820652e-01 9.999995e-01
#> ind
#> snp P3PEM09 P3PEM10 P3PEM11 P3PEM12
#> PotVar0029907 8.636011e-32 1.217587e-24 3.917873e-119 5.470898e-47
#> PotVar0029908 8.636011e-32 1.217587e-24 3.917873e-119 5.470898e-47
#> PotVar0029910 1.000000e+00 1.000000e+00 1.118180e-41 4.064108e-75
#> PotVar0029911 2.584219e-35 6.072818e-71 7.620664e-166 5.284934e-93
#> PotVar0029912 1.000000e+00 1.000000e+00 6.890318e-57 5.152357e-54
#> PotVar0029913 1.000000e+00 1.000000e+00 6.890318e-57 5.152357e-54
#> PotVar0029916 1.000000e+00 1.000000e+00 6.263650e-48 2.361282e-79
#> PotVar0029917 1.000000e+00 1.000000e+00 6.263650e-48 2.361282e-79
#> PotVar0029921 6.223919e-21 4.079204e-38 3.736409e-23 3.268182e-25
#> PotVar0029925 9.998199e-01 3.012689e-03 9.486801e-08 1.223367e-10
#> ind
#> snp P4PEM01 P4PEM02 P4PEM03 P4PEM04
#> PotVar0029907 2.200705e-27 3.769938e-56 5.551211e-34 4.181526e-23
#> PotVar0029908 2.200705e-27 3.769938e-56 5.551211e-34 4.181526e-23
#> PotVar0029910 5.176525e-25 9.244311e-66 3.412335e-72 1.000000e+00
#> PotVar0029911 2.443039e-64 6.399596e-75 1.257757e-86 2.186370e-31
#> PotVar0029912 1.000000e+00 3.896123e-72 1.210924e-48 1.000000e+00
#> PotVar0029913 1.000000e+00 3.896123e-72 1.210924e-48 1.000000e+00
#> PotVar0029916 5.715040e-21 2.167021e-76 1.102731e-89 1.000000e+00
#> PotVar0029917 5.715040e-21 2.167021e-76 1.102731e-89 1.000000e+00
#> PotVar0029921 2.667864e-30 1.201620e-20 1.512904e-22 1.461136e-35
#> PotVar0029925 9.999989e-01 5.164074e-10 4.215990e-08 9.999996e-01
#> ind
#> snp P4PEM05 P4PEM06 P4PEM07 P4PEM08
#> PotVar0029907 2.313274e-45 1.651060e-85 6.301154e-48 1.131789e-100
#> PotVar0029908 2.313274e-45 1.651060e-85 6.301154e-48 1.131789e-100
#> PotVar0029910 1.396068e-21 8.740588e-80 8.952097e-45 3.517186e-44
#> PotVar0029911 6.701369e-62 3.873511e-93 9.988661e-54 2.041085e-114
#> PotVar0029912 7.111016e-26 1.970310e-86 1.096190e-56 4.196006e-51
#> PotVar0029913 7.111016e-26 1.970310e-86 1.096190e-56 4.196006e-51
#> PotVar0029916 7.610970e-23 5.300384e-97 1.429811e-53 2.820458e-61
#> PotVar0029917 7.610970e-23 5.300384e-97 1.429811e-53 2.820458e-61
#> PotVar0029921 2.582300e-28 5.056176e-21 7.400263e-29 1.321811e-29
#> PotVar0029925 2.478636e-04 5.959217e-14 1.194867e-09 5.022729e-10
#> ind
#> snp P4PEM09 P4PEM10 P4PEM11 P4PEM12
#> PotVar0029907 7.522004e-20 3.598198e-26 3.222079e-115 1.956691e-48
#> PotVar0029908 7.522004e-20 3.598198e-26 3.222079e-115 1.956691e-48
#> PotVar0029910 7.265633e-47 1.203438e-104 1.248944e-28 4.874040e-50
#> PotVar0029911 1.213218e-56 4.831482e-135 4.363929e-132 3.583340e-92
#> PotVar0029912 2.540620e-26 1.454247e-25 2.173931e-33 4.961806e-27
#> PotVar0029913 2.540620e-26 1.454247e-25 2.173931e-33 4.961806e-27
#> PotVar0029916 1.495836e-51 3.667687e-105 1.528715e-34 2.299984e-22
#> PotVar0029917 1.495836e-51 3.667687e-105 1.528715e-34 2.299984e-22
#> PotVar0029921 1.139509e-34 8.289240e-30 6.895166e-34 3.331719e-28
#> PotVar0029925 2.732339e-05 4.651369e-03 6.102446e-03 1.885005e-02
#> ind
#> snp P5PEM01 P5PEM02 P5PEM03 P5PEM04
#> PotVar0029907 2.943527e-34 1.000000e+00 9.999996e-01 1.672396e-29
#> PotVar0029908 2.943527e-34 1.000000e+00 9.999996e-01 1.672396e-29
#> PotVar0029910 1.000000e+00 1.000000e+00 9.999998e-01 2.268529e-22
#> PotVar0029911 2.196999e-54 1.000000e+00 1.000000e+00 7.876628e-24
#> PotVar0029912 1.000000e+00 1.000000e+00 9.999999e-01 8.208321e-22
#> PotVar0029913 1.000000e+00 1.000000e+00 9.999999e-01 8.208321e-22
#> PotVar0029916 1.000000e+00 1.000000e+00 9.999996e-01 2.613627e-39
#> PotVar0029917 1.000000e+00 1.000000e+00 9.999996e-01 2.613627e-39
#> PotVar0029921 5.201890e-27 1.038400e-25 5.749117e-17 3.333920e-18
#> PotVar0029925 9.999731e-01 9.997328e-01 9.994681e-01 7.497978e-08
#> ind
#> snp P5PEM05 P5PEM06 P5PEM07 P5PEM08
#> PotVar0029907 4.667877e-27 2.772563e-37 5.400641e-29 6.433768e-49
#> PotVar0029908 4.667877e-27 2.772563e-37 5.400641e-29 6.433768e-49
#> PotVar0029910 1.873221e-17 6.809792e-12 1.601798e-20 3.454871e-20
#> PotVar0029911 9.734885e-37 3.718850e-48 1.227975e-41 1.282497e-53
#> PotVar0029912 4.672866e-18 1.581316e-16 8.833754e-19 2.796614e-20
#> PotVar0029913 4.672866e-18 1.581316e-16 8.833754e-19 2.796614e-20
#> PotVar0029916 3.415402e-19 4.625162e-18 2.130039e-27 1.112692e-16
#> PotVar0029917 3.415402e-19 4.625162e-18 2.130039e-27 1.112692e-16
#> PotVar0029921 1.594594e-19 4.268295e-29 8.715790e-19 2.031045e-30
#> PotVar0029925 6.744873e-04 2.433879e-02 5.199724e-07 4.746745e-01
#> ind
#> snp P5PEM09 P5PEM10 P5PEM11 P5PEM12
#> PotVar0029907 1.307356e-42 1.230273e-15 5.675591e-42 2.979186e-12
#> PotVar0029908 1.307356e-42 1.230273e-15 5.675591e-42 2.979186e-12
#> PotVar0029910 6.030324e-10 1.790215e-13 1.771841e-48 1.598804e-17
#> PotVar0029911 2.227496e-111 2.184160e-16 3.703720e-57 5.018292e-18
#> PotVar0029912 5.402702e-13 4.640762e-15 5.408364e-55 1.164798e-18
#> PotVar0029913 5.402702e-13 4.640762e-15 5.408364e-55 1.164798e-18
#> PotVar0029916 1.638466e-35 1.460608e-17 1.701239e-47 2.262426e-23
#> PotVar0029917 1.638466e-35 1.460608e-17 1.701239e-47 2.262426e-23
#> PotVar0029921 7.012609e-20 4.903760e-24 1.281530e-19 2.784387e-31
#> PotVar0029925 4.441952e-04 2.052759e-02 2.317707e-11 1.285323e-03
#> ind
#> snp P6PEM01 P6PEM02 P6PEM03 P6PEM04
#> PotVar0029907 1.000000e+00 2.728280e-15 6.888573e-11 9.403895e-16
#> PotVar0029908 1.000000e+00 2.728280e-15 6.888573e-11 9.403895e-16
#> PotVar0029910 1.000000e+00 1.000000e+00 3.935387e-10 1.000000e+00
#> PotVar0029911 1.000000e+00 2.926271e-38 5.763237e-30 5.841011e-23
#> PotVar0029912 1.000000e+00 1.000000e+00 9.999999e-01 1.000000e+00
#> PotVar0029913 1.000000e+00 1.000000e+00 9.999999e-01 1.000000e+00
#> PotVar0029916 1.000000e+00 1.000000e+00 5.372205e-18 1.000000e+00
#> PotVar0029917 1.000000e+00 1.000000e+00 5.372205e-18 1.000000e+00
#> PotVar0029921 1.374670e-17 7.635259e-25 1.096197e-19 2.411734e-25
#> PotVar0029925 9.985168e-01 9.998763e-01 9.985450e-01 9.999952e-01
#> ind
#> snp P6PEM05 P6PEM06 P6PEM07 P6PEM08
#> PotVar0029907 1.000000e+00 9.356645e-42 3.631892e-59 1.402192e-11
#> PotVar0029908 1.000000e+00 9.356645e-42 3.631892e-59 1.402192e-11
#> PotVar0029910 1.000000e+00 6.940454e-45 1.000000e+00 5.863450e-37
#> PotVar0029911 1.170920e-24 9.610974e-44 5.939370e-74 4.182221e-42
#> PotVar0029912 1.000000e+00 2.193226e-43 1.000000e+00 8.532940e-22
#> PotVar0029913 1.000000e+00 2.193226e-43 1.000000e+00 8.532940e-22
#> PotVar0029916 1.000000e+00 6.037745e-45 1.000000e+00 2.613718e-31
#> PotVar0029917 1.000000e+00 6.037745e-45 1.000000e+00 2.613718e-31
#> PotVar0029921 1.287190e-24 6.791795e-10 2.309717e-22 1.951906e-21
#> PotVar0029925 9.986426e-01 1.668267e-10 9.999556e-01 1.100301e-02
#> ind
#> snp P6PEM09 P6PEM10 P6PEM11 P6PEM12
#> PotVar0029907 3.781238e-53 3.931947e-50 2.542126e-32 8.600411e-29
#> PotVar0029908 3.781238e-53 3.931947e-50 2.542126e-32 8.600411e-29
#> PotVar0029910 3.551863e-17 3.811546e-45 1.000000e+00 9.999997e-01
#> PotVar0029911 2.234753e-69 6.022910e-54 2.410563e-56 1.175788e-41
#> PotVar0029912 5.675350e-17 1.052926e-50 1.000000e+00 1.000000e+00
#> PotVar0029913 5.675350e-17 1.052926e-50 1.000000e+00 1.000000e+00
#> PotVar0029916 1.066352e-11 9.092348e-62 1.000000e+00 1.000000e+00
#> PotVar0029917 1.066352e-11 9.092348e-62 1.000000e+00 1.000000e+00
#> PotVar0029921 3.174577e-11 1.044553e-24 5.100767e-15 5.553872e-18
#> PotVar0029925 2.307516e-04 1.222148e-13 9.998643e-01 9.998111e-01
#> ind
#> snp P7PEM01 P7PEM02 P7PEM03 P7PEM04
#> PotVar0029907 2.213836e-08 2.409209e-27 7.596384e-40 1.565243e-61
#> PotVar0029908 2.213836e-08 2.409209e-27 7.596384e-40 1.565243e-61
#> PotVar0029910 9.079075e-01 9.999847e-01 2.543481e-21 3.326902e-41
#> PotVar0029911 1.123553e-07 1.228047e-21 3.924480e-41 2.804345e-78
#> PotVar0029912 9.996498e-01 9.999740e-01 8.599803e-19 4.834492e-52
#> PotVar0029913 9.996498e-01 9.999740e-01 8.599803e-19 4.834492e-52
#> PotVar0029916 9.981332e-01 9.997696e-01 5.309284e-21 2.072000e-48
#> PotVar0029917 9.981332e-01 9.997696e-01 5.309284e-21 2.072000e-48
#> PotVar0029921 9.138976e-09 9.730028e-13 2.955230e-13 2.812611e-10
#> PotVar0029925 9.833923e-01 9.932374e-01 1.475638e-04 4.602064e-17
#> ind
#> snp P7PEM05 P7PEM06 P7PEM07 P7PEM08
#> PotVar0029907 7.100034e-38 5.657827e-25 1.031084e-12 1.635426e-34
#> PotVar0029908 7.100034e-38 5.657827e-25 1.031084e-12 1.635426e-34
#> PotVar0029910 2.886572e-26 1.709722e-14 9.990205e-01 8.294180e-30
#> PotVar0029911 1.975781e-29 1.158828e-32 3.981748e-25 6.686304e-71
#> PotVar0029912 1.684520e-29 7.415785e-15 9.998649e-01 2.888918e-19
#> PotVar0029913 1.684520e-29 7.415785e-15 9.998649e-01 2.888918e-19
#> PotVar0029916 1.771141e-41 3.599898e-16 9.999667e-01 7.250170e-47
#> PotVar0029917 1.771141e-41 3.599898e-16 9.999667e-01 7.250170e-47
#> PotVar0029921 9.478033e-21 2.065761e-13 1.825266e-10 1.048188e-29
#> PotVar0029925 3.135645e-08 1.093209e-02 5.693802e-04 1.016223e-01
#> ind
#> snp P7PEM09 P7PEM10 P7PEM11 P7PEM12
#> PotVar0029907 7.613507e-31 3.723471e-27 1.139531e-67 4.401065e-04
#> PotVar0029908 7.613507e-31 3.723471e-27 1.139531e-67 4.401065e-04
#> PotVar0029910 1.606537e-23 1.280543e-36 1.960323e-18 4.449441e-08
#> PotVar0029911 1.995868e-47 5.994920e-44 2.377175e-79 1.789794e-26
#> PotVar0029912 2.947106e-27 1.237128e-46 4.380614e-22 9.999897e-01
#> PotVar0029913 2.947106e-27 1.237128e-46 4.380614e-22 9.999897e-01
#> PotVar0029916 3.708492e-36 1.241956e-50 3.827615e-17 2.174135e-07
#> PotVar0029917 3.708492e-36 1.241956e-50 3.827615e-17 2.174135e-07
#> PotVar0029921 9.289850e-18 5.736650e-23 5.736650e-23 1.981675e-18
#> PotVar0029925 1.004492e-07 9.766637e-09 4.956577e-03 9.975430e-01
#>