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Research

Peer Reviewed and Published

• Gerard, D. (2020). Data-based RNA-seq simulations by binomial thinning. BMC Bioinformatics 21(1), 206, p. 1–14.
  <doi:10.1186/s12859-020-3450-9> <bioRxiv:758524>

• Gerard, D., & Stephens, M. (2020). Empirical Bayes Shrinkage and False Discovery Rate Estimation, Allowing For Unwanted Variation. Biostatistics, 21(1), p. 15–32.
  <doi:10.1093/biostatistics/kxy029> <arXiv:1709.10066>

• Gerard, D. & Ferrão, L. F. V. (2020). Priors for Genotyping Polyploids. Bioinformatics 36(6), p. 1795–1800.
  <doi:10.1093/bioinformatics/btz852> <bioRxiv:751784>

• Gerard, D., & Stephens, M. (accepted). Unifying and Generalizing Methods for Removing Unwanted Variation Based on Negative Controls. Statistica sinica (in press), p. 1–42.
  <doi:10.5705/ss.202018.0345> <arXiv:1705.08393>

• Pollack, J. D., Gerard, D., Makhatadze, G., & Pearl, D. K. (2019). Evolutionary conservation and structural localizations suggest a physical trace of metabolism’s progressive geochronological emergence. Journal of Biomolecular Structure and Dynamics, ja, p. 1–20.
  <doi:10.1080/07391102.2019.1679666>

• Gerard, D., Ferrão, L. F. V., Garcia, A. A. F., & Stephens, M. (2018). Genotyping Polyploids from Messy Sequencing Data. Genetics, 210(3), p. 789–807.
  <doi:10.1534/genetics.118.301468> <bioRxiv:281550>

• Gerard, D., & Hoff, P. (2017). Adaptive higher-order spectral estimators. Electronic Journal of Statistics, 11(2), p. 3703–3737.
  <doi:10.1214/17-EJS1330> <arXiv:1505.02114>

• Gerard, D., & Hoff, P. (2016). A higher-order LQ decomposition for separable covariance models. Linear Algebra and its Applications, 505, p. 57–84.
  <doi:10.1016/j.laa.2016.04.033> <arXiv:1410.1094>

• Gerard, D., & Hoff, P. (2015). Equivariant minimax dominators of the MLE in the array normal model. Journal of Multivariate Analysis, 137, p. 32–49.
  <doi:10.1016/j.jmva.2015.01.020> <arXiv:1408.0424>

• Pollack, J. D., Gerard, D., & Pearl, D. K. (2013). Uniquely Localized Intra-Molecular Amino Acid Concentrations at the Glycolytic Enzyme Catalytic/Active Centers of Archaea, Bacteria and Eukaryota are Associated with Their Proposed Temporal Appearances on Earth. Origins of Life and Evolution of Biospheres, 43(2), p. 161–187.
  <doi:10.1007/s11084-013-9331-8>

• Gerard, D., Gibbs, H. L., & Kubatko, L. (2011). Estimating hybridization in the presence of coalescence using phylogenetic intraspecific sampling. BMC evolutionary biology, 11(1), 291, p. 1–12.
  <doi:10.1186/1471-2148-11-291>

Preprints

• Gerard, D. (2020). Pairwise Linkage Disequilibrium Estimation for Polyploids. bioRxiv, p. 1–19.
  <doi:10.1101/2020.08.03.234476>