Changelog

Source: NEWS.md

hwep 2.0.3

• Updates citations to published version of Gerard (2023a) and in press version of Gerard (2023b).

hwep 2.0.22023-05-16

• Add more options to simgl() to increase the flexibility of the simulations.
• Added an allopolyploid prior to the random mating tests.

hwep 2.0.12023-03-15

• Updates package for compatibility with newer version of rstan.

hwep 2.0.02022-08-16

• Added rmbayes() and associated functions for Bayes tests for random mating.
• Multiple restarts in EM algorithm for rmlike() to fix issues with local convergence.
• Added rmbayesgl() for Bayes test of random mating when using genotype likelihoods to account for genotype uncertainty. This uses the rstan package as a backend.
• Added glsim() for genotype likelihood simulation.
• qqpvalue() will now allow the user to return a ggplot object.
• Added menbayesgl() for testing Mendelian segregation frequencies from S1 and F1 populations.

hwep 0.0.22022-05-02

• New function, qqpvalue(): A QQ-plot function for p-values on the  − log₁₀-scale.
• New function, ts_bands(): Calculates simultaneous confidence bands for uniform quantiles.
• New function, f1dr(): Estimates the double reduction rate from an F1 population via maximum likelihood.
• Edit aggregation strategy so that it works a little better to mitigate the effects of the asymptotic approximation.

hwep 0.0.12021-09-28

• Initial release.